Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Identifying and targeting abnormal mitochondrial localization associated with psychosis.

bioRxiv : the preprint server for biology·2026
Same author

Assessing Potential Data Sources for Landscape-scale Terrestrial Biodiversity Indicators.

Environmental management·2026
Same author

Progress and new challenges in image-based profiling.

Molecular systems biology·2026
Same author

Cell Painting for cytotoxicity and mode-of-action analysis in primary human hepatocytes.

Cell systems·2026
Same author

AI agents in drug discovery: applications and case studies.

Drug discovery today·2026
Same author

A scalable approach to resolving variants of uncertain significance.

bioRxiv : the preprint server for biology·2026
Same journal

conMItion: an R package adjusting confounding factors for associations in multi-omics.

Bioinformatics (Oxford, England)·2026
Same journal

SpaMFG: a Spatial Multi-omics Integration Method based on Feature Grouping.

Bioinformatics (Oxford, England)·2026
Same journal

CSCN: Inference of Cell-Specific Causal Networks Using Single-Cell RNA-Seq Data.

Bioinformatics (Oxford, England)·2026
Same journal

Sparse CCA-Based Mediation Analysis with High-Dimensional Exposures and Mediators.

Bioinformatics (Oxford, England)·2026
Same journal

Enhancing Cross-Context Generalization in Drug Perturbation Prediction with a Multimodal Conditional Diffusion Framework.

Bioinformatics (Oxford, England)·2026
Same journal

Primer Design through Submodular Function Estimation.

Bioinformatics (Oxford, England)·2026
See all related articles

Related Experiment Video

Updated: Jun 4, 2026

Workflow for High-content, Individual Cell Quantification of Fluorescent Markers from Universal Microscope Data, Supported by Open Source Software
09:57

Workflow for High-content, Individual Cell Quantification of Fluorescent Markers from Universal Microscope Data, Supported by Open Source Software

Published on: December 16, 2014

Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software.

Lee Kamentsky1, Thouis R Jones, Adam Fraser

  • 1Imaging Platform, Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA.

Bioinformatics (Oxford, England)
|February 26, 2011
PubMed
Summary
This summary is machine-generated.

CellProfiler 2.0 offers enhanced, automated image analysis for biology researchers. This robust, user-friendly software facilitates high-throughput studies with new features and ImageJ compatibility.

More Related Videos

Multiplexed Barcoding Image Analysis for Immunoprofiling and Spatial Mapping Characterization in the Single-Cell Analysis of Paraffin Tissue Samples
08:18

Multiplexed Barcoding Image Analysis for Immunoprofiling and Spatial Mapping Characterization in the Single-Cell Analysis of Paraffin Tissue Samples

Published on: April 7, 2023

A High-throughput Cell Microarray Platform for Correlative Analysis of Cell Differentiation and Traction Forces
12:04

A High-throughput Cell Microarray Platform for Correlative Analysis of Cell Differentiation and Traction Forces

Published on: March 1, 2017

Related Experiment Videos

Last Updated: Jun 4, 2026

Workflow for High-content, Individual Cell Quantification of Fluorescent Markers from Universal Microscope Data, Supported by Open Source Software
09:57

Workflow for High-content, Individual Cell Quantification of Fluorescent Markers from Universal Microscope Data, Supported by Open Source Software

Published on: December 16, 2014

Multiplexed Barcoding Image Analysis for Immunoprofiling and Spatial Mapping Characterization in the Single-Cell Analysis of Paraffin Tissue Samples
08:18

Multiplexed Barcoding Image Analysis for Immunoprofiling and Spatial Mapping Characterization in the Single-Cell Analysis of Paraffin Tissue Samples

Published on: April 7, 2023

A High-throughput Cell Microarray Platform for Correlative Analysis of Cell Differentiation and Traction Forces
12:04

A High-throughput Cell Microarray Platform for Correlative Analysis of Cell Differentiation and Traction Forces

Published on: March 1, 2017

Area of Science:

  • Biological imaging
  • Computational biology
  • Bioinformatics

Background:

  • Growing demand for accurate, automated image analysis in biological research.
  • Existing tools may not fully meet the needs of a rapidly expanding user base.

Purpose of the Study:

  • To introduce CellProfiler 2.0, an improved software solution for biological image analysis.
  • To address the need for more robust, user-friendly, and high-throughput image analysis tools.

Main Methods:

  • Development of CellProfiler 2.0 with new algorithms and features.
  • Integration of ImageJ plugin compatibility within CellProfiler pipelines.
  • Engineering for enhanced robustness and user-friendliness.

Main Results:

  • CellProfiler 2.0 provides a more robust and user-friendly platform.
  • New algorithms and features support high-throughput biological research.
  • Seamless execution of ImageJ plugins within CellProfiler pipelines is now possible.

Conclusions:

  • CellProfiler 2.0 effectively meets the evolving needs of the biology research community for automated image analysis.
  • The software enhances efficiency and capability for high-throughput biological studies.
  • CellProfiler 2.0 represents a significant advancement in accessible biological image analysis tools.