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Updated: Feb 8, 2026

Author Spotlight: Combining Proximity Ligand Assay with Gamma-H2AX Staining to Characterize Protein Interactions in DNA Damage Response
Published on: August 2, 2024
Protein-protein interactions occur between p53 phosphoforms and ATM and 53BP1 at sites of exogenous DNA damage
Shahnaz T Al Rashid1, Shane M Harding, Cindy Law
1Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada.
Abstract:
We have previously shown that the Ser15-phosphorylated p53 phosphoform, p53(Ser15), can localize at sites of ionizing radiation-induced DNA damage. In this study, we hypothesized that the non-specific DNA binding domain (NSDBD) of the p53 carboxy-terminus (C-terminus) mediates chromatin anchoring at sites of DNA damage to interact with two key mediators of the DNA damage response (DDR): ATM and 53BP1. Exogenous YFP-p53 fusion constructs expressing C-terminus deletion mutants of p53 were transfected into p53-null H1299 cells and tracked by microscopy and biochemistry to determine relative chromatin-binding pre- and postirradiation. We observed that exogenous YFP-p53(WT) and YFP-p53(Δ367-393) associated with ATM(Ser1981) and 53BP1 in the nuclear, chromatin-bound fractions after DNA damage. Of interest, YFP-p53(Δ1-299) fusion proteins, which lack transcriptional trans-activation and the Ser15-residue, bound to ATM(Ser1981) but not to 53BP1. In support of these data, we used subnuclear UV-microbeam and immunoprecipitation analyses of irradiated normal human fibroblasts (HDFs) that confirmed an interaction between endogenous p53 and ATM or 53BP1. Based on these observations, we propose a model whereby a pre-existing pool of p53 responds immediately to radiation-induced DNA damage using the C-terminus to spatially facilitate protein-protein interactions and the DDR at sites of DNA damage.
Insights
The p53 protein
Area of Science:
- Molecular Biology
- Cellular Biology
- Biochemistry
Background:
- The p53 protein is a crucial tumor suppressor involved in the DNA damage response.
- Phosphorylation of p53 at Serine 15 (p53(Ser15)) is a key event following DNA damage.
- p53's role in anchoring at DNA damage sites and interacting with ATM and 53BP1 requires further elucidation.
Purpose of the Study:
- To investigate the role of the p53 carboxy-terminus (C-terminus) non-specific DNA binding domain (NSDBD) in chromatin anchoring at DNA damage sites.
- To determine how the p53 C-terminus mediates interactions with ATM and 53BP1 during the DNA damage response (DDR).
Main Methods:
- Utilized exogenous YFP-p53 fusion constructs with C-terminus deletion mutants in p53-null H1299 cells.
- Employed microscopy and biochemistry to assess chromatin binding of p53 mutants pre- and post-irradiation.
- Conducted subnuclear UV-microbeam and immunoprecipitation analyses in irradiated human fibroblasts.
Main Results:
- Wild-type YFP-p53 and a C-terminal deletion mutant (YFP-p53(Δ367-393)) associated with ATM(Ser1981) and 53BP1 at chromatin after DNA damage.
- A mutant lacking the N-terminus and Ser15 (YFP-p53(Δ1-299)) bound ATM(Ser1981) but not 53BP1.
- Confirmed interactions between endogenous p53 and ATM or 53BP1 in irradiated human fibroblasts.
Conclusions:
- The p53 C-terminus, specifically its NSDBD, is critical for chromatin anchoring at DNA damage sites.
- p53 utilizes its C-terminus to facilitate interactions with ATM and 53BP1, thereby promoting the DNA damage response.
- A model is proposed where p53 rapidly responds to DNA damage by using its C-terminus for spatial facilitation of protein interactions and DDR.
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