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Biotin-based Pulldown Assay to Validate mRNA Targets of Cellular miRNAs
Published on: June 12, 2018
Enforced expression of miR-125b affects myelopoiesis by targeting multiple signaling pathways
Ewa Surdziel1, Maciej Cabanski, Iris Dallmann
1Department of Hematology, Hemostasis, Oncology and Stem Cell Transplantation, Hannover Medical School, Hannover, Germany.
Abstract:
MicroRNAs (miRNAs) are small, noncoding RNAs that regulate gene expression by sequence-specific targeting of multiple mRNAs. Although lineage-, maturation-, and disease-specific miRNA expression has been described, miRNA-dependent phenotypes and miRNA-regulated signaling in hematopoietic cells are largely unknown. Combining functional genomics, biochemical analysis, and unbiased and hypothesis-driven miRNA target prediction, we show that lentivirally over-expressed miR-125b blocks G-CSF-induced granulocytic differentiation and enables G-CSF-dependent proliferation of murine 32D cells. In primary lineage-negative cells, miR-125b over-expression enhances colony-formation in vitro and promotes myelopoiesis in mouse bone marrow chimeras. We identified Stat3 and confirmed Bak1 as miR-125b target genes with approximately 30% and 50% reduction in protein expression, respectively. However, gene-specific RNAi reveals that this reduction, alone and in combination, is not sufficient to block G-CSF-dependent differentiation. STAT3 protein expression, DNA-binding, and transcriptional activity but not induction of tyrosine-phosphorylation and nuclear translocation are reduced upon enforced miR-125b expression, indicating miR-125b-mediated reduction of one or more STAT3 cofactors. Indeed, we identified c-Jun and Jund as potential miR-125b targets and demonstrated reduced protein expression in 32D/miR-125b cells. Interestingly, gene-specific silencing of JUND but not c-JUN partially mimics the miR-125b over-expression phenotype. These data demonstrate coordinated regulation of several signaling pathways by miR-125b linked to distinct phenotypes in myeloid cells.
Insights
MicroRNAs (miRNAs) regulate gene expression. Overexpressed miR-125b blocks granulocytic differentiation and promotes myelopoiesis by targeting Stat3 and Jund in hematopoietic cells.
Area of Science:
- Molecular Biology
- Hematopoiesis
- Gene Regulation
Background:
- MicroRNAs (miRNAs) are small, noncoding RNAs regulating gene expression.
- MiRNA roles in hematopoietic cell differentiation and signaling remain largely unknown.
- Understanding miRNA function is crucial for hematological research.
Purpose of the Study:
- Investigate the role of miR-125b in hematopoietic cell differentiation.
- Identify miR-125b targets and downstream signaling pathways.
- Elucidate miRNA-dependent phenotypes in myeloid cells.
Main Methods:
- Functional genomics and biochemical analysis.
- MiRNA target prediction (unbiased and hypothesis-driven).
- Overexpression of miR-125b in murine 32D cells and primary hematopoietic cells.
- In vitro colony formation assays and in vivo bone marrow chimera studies.
- Gene-specific RNA interference (RNAi) and protein expression analysis.
Main Results:
- Overexpressed miR-125b blocks granulocyte colony-stimulating factor (G-CSF)-induced granulocytic differentiation.
- miR-125b enhances colony formation and promotes myelopoiesis.
- Identified Stat3 and Bak1 as miR-125b targets, reducing their protein expression.
- miR-125b reduces STAT3 DNA-binding and transcriptional activity, implicating cofactors.
- c-Jun and Jund identified as potential targets; JUND silencing partially mimics miR-125b phenotype.
Conclusions:
- miR-125b plays a significant role in regulating myeloid cell differentiation and proliferation.
- Coordinated regulation of signaling pathways, including Stat3 and Jund, by miR-125b.
- Demonstrates distinct miRNA-linked phenotypes in myeloid cells, impacting hematopoiesis.
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