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Related Concept Videos

Antigens Involved in Adaptive Immunity01:26

Antigens Involved in Adaptive Immunity

An antigen is any substance the immune system identifies as foreign and potentially harmful to the body, prompting an immune response. Antigens have two functional properties: immunogenicity and reactivity. Immunogenicity is the ability of an antigen to stimulate a specific immune response. At the same time, reactivity describes the antigen's ability to react with the cells and antibodies produced in response to it.
Complete Antigens
Complete antigens possess both immunogenicity and reactivity.
Conserved Binding Sites01:49

Conserved Binding Sites

Many proteins’ biological role depends on their interactions with their ligands, small molecules that bind to specific locations on the protein known as ligand-binding sites. Ligand-binding sites are often conserved among homologous proteins as these sites are critical for protein function.
Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally analyses the...
Antigen Processing Pathways01:31

Antigen Processing Pathways

MHC molecules are key players in the immune response, enabling T cells to recognize and respond to specific antigens. They are present on the surface of all nucleated cells in the body and are instrumental in presenting antigens to T cells and activating them. T cells recognize the MHC-antigen complex and initiate an immune response. MHC class I and MHC class II are two main types of MHC molecules, each associated with a distinct antigen processing pathway.
MHC Class I: Presenting Endogenous...
Ligand Binding Sites02:40

Ligand Binding Sites

Proteins are dynamic macromolecules that carry out a wide variety of essential processes; however, the activities of most proteins depend on their interactions with other molecules or ions, known as ligands.
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...

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Related Experiment Video

Updated: Jun 3, 2026

Immunopeptidomics: Isolation of Mouse and Human MHC Class I- and II-Associated Peptides for Mass Spectrometry Analysis
09:32

Immunopeptidomics: Isolation of Mouse and Human MHC Class I- and II-Associated Peptides for Mass Spectrometry Analysis

Published on: October 15, 2021

Characterization of HLA-DQ-Specific Peptide-Binding Motifs.

Y van de Wal1, R Amons, F Koning

  • 1Department of Immunohaematology and Bloodbank, University of Leiden, Leiden, The Netherlands.

Methods in Molecular Medicine
|March 5, 2011
PubMed
Summary

Understanding Human Leukocyte Antigen (HLA) allele associations with immune disorders is key. Characterizing HLA peptide-binding motifs helps identify disease-causing peptides and antigens, advancing immunology research.

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Last Updated: Jun 3, 2026

Immunopeptidomics: Isolation of Mouse and Human MHC Class I- and II-Associated Peptides for Mass Spectrometry Analysis
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Area of Science:

  • Immunology
  • Molecular Biology
  • Genetics

Background:

  • Immune disorders are linked to specific Human Leukocyte Antigen (HLA) alleles.
  • The exact mechanisms of these HLA-disease associations are not fully understood.
  • Peptides bound to HLA molecules are implicated in disease pathogenesis.

Purpose of the Study:

  • To characterize peptide-binding motifs of disease-associated HLA class II molecules.
  • To identify potential disease-inducing peptides and antigens by understanding HLA-peptide interactions.

Main Methods:

  • Analyzing naturally processed HLA-bound peptides.
  • Utilizing peptide display libraries (M13 bacteriophage and synthetic).
  • Assessing peptide-binding requirements via peptide analogs with single amino acid substitutions.

Main Results:

  • Defined allele-dependent peptide-binding motifs based on anchor residue preferences.
  • Demonstrated the utility of these motifs for predicting peptide binding to specific HLA molecules.

Conclusions:

  • Characterizing HLA peptide-binding motifs is crucial for identifying disease-associated peptides.
  • This approach aids in understanding the molecular basis of HLA-disease associations.
  • Predictive motifs offer a valuable tool for immunological research and disease investigation.