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Detection and Genogrouping of Noroviruses from Children's Stools By Taqman One-step RT-PCR
Published on: July 22, 2012
Rotavirus and norovirus infections in children in Sana'a, Yemen
Andrew Kirby1, Ali Al-Eryani, Najla Al-Sonboli
1Department of Clinical Infection, Institute of Infection and Global Health, University of Liverpool, Liverpool, UK. amk@liv.ac.uk
Insights
Rotavirus and norovirus are common causes of acute gastroenteritis in children in Yemen. Rotavirus vaccines could significantly reduce childhood diarrhea in this region.
Area of Science:
- Pediatric Infectious Diseases
- Viral Gastroenteritis Epidemiology
- Public Health Microbiology
Background:
- Acute gastroenteritis (AGE) is a major cause of childhood morbidity and mortality globally.
- Understanding the etiological agents of AGE is crucial for effective prevention and control strategies.
- Yemen faces significant public health challenges, necessitating localized epidemiological data.
Purpose of the Study:
- To determine the prevalence and common genotypes of rotavirus and norovirus infections in children with AGE in Sana'a, Yemen.
- To provide epidemiological data to inform public health interventions and vaccination strategies.
Main Methods:
- A cross-sectional study was conducted from November 2007 to March 2009.
- Children aged 1 month to 5 years presenting with AGE at two hospitals in Sana'a were enrolled.
- Rotavirus and norovirus were detected using ELISA and RT-PCR, with genotyping performed via RT-PCR and nucleotide sequencing.
Main Results:
- A total of 290 children were included in the study.
- Rotavirus infection was detected in 27% (78/290) and norovirus in 10% (30/290) of children.
- Predominant rotavirus genotypes were G1P[8] (55%) and G9P[8] (21%). The main norovirus genotype was GII.4 (27%).
Conclusions:
- Rotavirus and norovirus are significant etiological agents of acute gastroenteritis in children in Sana'a, Yemen.
- The identified rotavirus genotypes suggest potential efficacy of existing rotavirus vaccines.
- Implementing rotavirus vaccination programs could substantially decrease the burden of childhood diarrhea in Yemen.
Objectives:
To describe the epidemiology of rotavirus and norovirus infection among children with acute gastroenteritis in Sana'a, Yemen.
Methods:
A cross-sectional study from November 2007 to March 2009 of children aged 1 month to 5 years attending the emergency and outpatient departments of two hospitals in Sana'a with acute gastroenteritis. Rotavirus was detected by ELISA and genotyped by RT-PCR. Norovirus was detected by End Point RT-PCR and nucleotide sequencing.
Results:
A total of 290 children (48% in the emergency department and 52% in the outpatient department of the children respectively) were enrolled. Rotavirus infections were detected in 78 (27%) and norovirus infections in 30 (10%). Rotavirus genotypes included G1P[8] (55%), G9P[8] (21%) and G2P[4] (12%) with G12 comprising 3% of strain types. The main norovirus genotype was GII.4 (27%) with >10 other genotypes detected.
Conclusions:
Rotavirus and norovirus infections are common causes of gastroenteritis in Yemen. Rotavirus vaccines could play a significant role in the control of acute childhood diarrhoea in this setting.
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