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Published on: January 28, 2020
[Association study between TNFSF4 and coronary heart disease]
Min-Zhi Chen1, Guang-Hui Cheng, Long Ma
1Institute of Medical Genetics, School of Medicine, Shandong University, Jinan 250012, China. chenminzhi11205@163.com
Insights
Tumor necrosis factor superfamily member 4 (TNFSF4) is linked to coronary heart disease (CHD) in the Chinese Han population. Haplotype analysis revealed significant associations, supporting TNFSF4 as a susceptibility gene for CHD.
Area of Science:
- Genetics
- Cardiovascular Disease Research
Context:
- Previous studies on TNFSF4 as an atherosclerosis susceptibility gene yielded inconsistent results across populations.
- Investigating the role of TNFSF4 in coronary heart disease (CHD) within the Chinese Han population is crucial due to conflicting prior findings.
Purpose:
- To analyze the association between five single-nucleotide polymorphisms (SNPs) of the TNFSF4 gene and CHD in the Chinese Han population.
- To apply traditional statistical methods and principal component score-based logistic regression to evaluate the genetic contribution of TNFSF4 to CHD.
Summary:
- Analysis of five TNFSF4 SNPs (rs1234314, rs45454293, rs3850641, rs1234313, rs3861950) in 498 cases and 509 controls showed no statistical significance for individual SNPs in logistic regression after Bonferroni correction.
- Haplotype analysis identified significant differences in frequencies for six haplotypes between cases and controls (e.g., CTAGT, GCGAC).
- Principal component score-based logistic regression indicated statistical significance for the first principal component (P=0.0236), suggesting an overall genetic contribution.
Impact:
- The findings suggest that TNFSF4 is a susceptibility gene for coronary heart disease (CHD) in the Chinese Han population.
- This study contributes to understanding the genetic basis of CHD and highlights the importance of population-specific genetic factors.
- The results warrant further investigation into the specific haplotypes and their functional mechanisms in CHD pathogenesis.
Abstract:
Previous studies suggest that TNFSF4 is a susceptibility gene of atherosclerosis. But case-control association analysis in Swedish population and German population provided inconsistent, even opposite results. In order to explore the relationship between this gene and coronary heart disease (CHD) in Chinese Han population, we collected 498 cases and 509 controls from Qilu hospital of Shandong University and analyzed the association between five single-nucleotide polymorphisms (SNPs) (rs1234314, rs45454293, rs3850641, rs1234313, and rs3861950) of TNFSF4 and CHD. On the basis of using traditional statistical analysis methods based on single SNP and haplotypes, we introduced principal component score-based logistic regression analysis to deal with the data. The results suggested that in Armitage trend test, only rs3861950 was significant, when used the Bonferroni correction, and all of the five SNPs were not statistically significant. In the logistic regression analysis which adjusts the confounding factors, all of the five SNPs were not statistically significant. In haplotype analysis, the frequencies of six haplotypes were significantly different in cases and controls (CTAGT (P=0.0006), CTAAC (P=0.0123), CCAGT (P=0.0004), GTGGT (P=0.0329), GCGAC (P<0.0001), and GCAAC (P=0.0173)). In principal component score-based logistic regression analysis, the first principal component has statistical significance (P=0.0236). These results indicate that TNFSF4 is a susceptibility gene of CHD in Chinese Han population.
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