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Testing the Role of Multicopy Plasmids in the Evolution of Antibiotic Resistance
Published on: May 2, 2018
Evolution and spread of a multidrug-resistant Proteus mirabilis clone with chromosomal AmpC-type cephalosporinases in
M M D'Andrea1, E Literacka, A Zioga
1Department of Molecular Biology, Section of Microbiology, University of Siena, Siena, Italy.
Abstract:
Proteus mirabilis isolates obtained in 1999 to 2008 from three European countries were analyzed; all carried chromosomal AmpC-type cephalosporinase bla(CMY) genes from a Citrobacter freundii origin (bla(CMY-2)-like genes). Isolates from Poland harbored several bla(CMY) genes (bla(CMY-4), bla(CMY-12), bla(CMY-14), bla(CMY-15), and bla(CMY-38) and the new gene bla(CMY-45)), while isolates from Italy and Greece harbored bla(CMY-16) only. Earlier isolates with bla(CMY-4) or bla(CMY-12), recovered in France from Greek and Algerian patients, were also studied. All isolates showed striking similarities. Their bla(CMY) genes resided within ISEcp1 transposition modules, named Tn6093, characterized by a 110-bp distance between ISEcp1 and bla(CMY), and identical fragments of both C. freundii DNA and a ColE1-type plasmid backbone. Moreover, these modules were inserted into the same chromosomal site, within the pepQ gene. Since ColE1 plasmids carrying ISEcp1 with similar C. freundii DNA fragments (Tn6114) had been identified earlier, it is likely that a similar molecule had mediated at some stage this DNA transfer between C. freundii and P. mirabilis. In addition, isolates with bla(CMY-12), bla(CMY-15), and bla(CMY-38) genes harbored a second bla(CMY) copy within a shorter ISEcp1 module (Tn6113), always inserted downstream of the ppiD gene. Sequence analysis of all mobile bla(CMY-2)-like genes indicated that those integrated in the P. mirabilis chromosome form a distinct cluster that may have evolved by the stepwise accumulation of mutations. All of these observations, coupled to strain typing data, suggest that the bla(CMY) genes studied here may have originated from a single ISEcp1-mediated mobilization-transfer-integration process, followed by the spread and evolution of a P. mirabilis clone over time and a large geographic area.
Insights
AmpC-type cephalosporinase bla(CMY) genes in Proteus mirabilis isolates from Europe likely originated from a single transfer event from Citrobacter freundii. These genes spread via ISEcp1 transposition modules, evolving within P. mirabilis clones across a wide geographic area.
Area of Science:
- Microbiology
- Molecular Biology
- Genetics
Background:
- AmpC-type cephalosporinases confer resistance to beta-lactam antibiotics.
- The bla(CMY) gene, originating from Citrobacter freundii, is a significant cause of AmpC production.
- Proteus mirabilis is an opportunistic pathogen frequently associated with healthcare-associated infections.
Purpose of the Study:
- To investigate the origin and dissemination of chromosomal AmpC-type cephalosporinase bla(CMY) genes in Proteus mirabilis isolates.
- To characterize the genetic elements involved in the transfer and integration of bla(CMY) genes into the P. mirabilis chromosome.
- To understand the evolutionary pathways of bla(CMY) genes in P. mirabilis.
Main Methods:
- Analysis of Proteus mirabilis isolates collected from 1999-2008 in three European countries.
- Whole-genome sequencing and comparative analysis of bla(CMY) gene-containing mobile elements (ISEcp1 transposition modules).
- Strain typing and phylogenetic analysis to assess clonal spread and evolution.
Main Results:
- All analyzed P. mirabilis isolates carried bla(CMY-2)-like genes of Citrobacter freundii origin.
- Isolates from Poland harbored diverse bla(CMY) genes, while those from Italy and Greece exclusively carried bla(CMY-16).
- Identical ISEcp1 transposition modules (Tn6093) and insertion sites within the pepQ gene were observed across isolates, suggesting a common origin.
- Some isolates also contained a second bla(CMY) copy within a shorter ISEcp1 module (Tn6113) downstream of the ppiD gene.
- Sequence analysis indicated that bla(CMY) genes in P. mirabilis form a distinct cluster, potentially evolving through stepwise mutations.
Conclusions:
- The bla(CMY) genes in the studied P. mirabilis isolates likely resulted from a single ISEcp1-mediated mobilization, transfer, and integration event from C. freundii.
- Subsequent spread and evolution of a P. mirabilis clone facilitated the dissemination of these resistance genes over a large geographic area.
- The findings highlight the role of mobile genetic elements in the emergence and spread of antibiotic resistance in clinically relevant bacteria.
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