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Subcellular Fractionation of Primary Chronic Lymphocytic Leukemia Cells to Monitor Nuclear/Cytoplasmic Protein Trafficking
Published on: October 23, 2019
Simultaneous aberrations of single CDKN2A network components and a high Rb phosphorylation status can differentiate
Kjell M Kaune1, Christine Neumann, Christian Hallermann
1Department of Dermatology, Venereology and Allergology, Georg August University Göttingen, Von-Siebold-Straße 3, Göttingen, Germany.kkaune@gwdg.de
Abstract:
The cyclin-dependent kinase inhibitor 2A (CDKN2A) gene on chromosome 9p21 encodes p16 (INK4A), the inhibitor of the CDK4/retinoblastoma (Rb) cell proliferation pathway, as well as p14 (ARF), which controls p53-dependent pathways. Inactivation of p16 has previously been associated with the prognostically unfavourable primary cutaneous diffuse large B-cell lymphoma, leg type (PCLBCL, LT). In this work, we analysed 22 tumors [nine primary cutaneous follicle centre lymphomas (PCFCL), seven primary cutaneous marginal zone lymphomas (PCMZL) and six PCLBCL, LT] not only for alterations of the p16 gene but also for p14, p53 and Rb by fluorescence in situ hybridization (FISH) and immunohistochemistry. In most PCLBCL, LT (4/6) alterations of CDKN2A (two biallelic deletions, one monoallelic deletion and one trisomy 9) and in addition the highest frequency of deletions of p53 (3/6) and Rb (3/6) were detected. p16 was not expressed but very high levels of phosphorylated Rb, indicating a functional effect of genomic CDKN2A alterations on the protein level in PCLBCL, LT. Regarding the p14/p53 axis, PCLBCL, LT showed a variable expression. Neither PCFCL nor PCMZL showed alterations of CDKN2A and also deletions of p53 or Rb were extremely rare in these subtypes. Exclusively in PCMZL, p53 protein was consistently lacking. In conclusion, only PCLBCL, LT is characterized by a high frequency of aberrations of the CDKN2A network components in both important tumor suppressor pathways regulated by the CDKN2A gene. Moreover, PCLBCL, LT appears to be distinguishable from PCMZL not only by its level of p53 expression but also by its stage of Rb phosphorylation. The latter may also apply to a subgroup of PCFCL.
Insights
Primary cutaneous diffuse large B-cell lymphoma, leg type (PCLBCL, LT) shows frequent alterations in the cyclin-dependent kinase inhibitor 2A (CDKN2A) gene network. These genetic changes impact cell proliferation and tumor suppressor pathways, distinguishing it from other lymphoma subtypes.
Area of Science:
- Oncology
- Genetics
- Molecular Biology
Background:
- The cyclin-dependent kinase inhibitor 2A (CDKN2A) gene encodes p16 (INK4A) and p14 (ARF), crucial regulators of cell proliferation and tumor suppression.
- Inactivation of p16 is linked to poor prognosis in primary cutaneous diffuse large B-cell lymphoma, leg type (PCLBCL, LT).
Purpose of the Study:
- To investigate alterations in the CDKN2A gene network, including p16, p14, p53, and retinoblastoma (Rb) protein, in various primary cutaneous B-cell lymphomas.
- To determine if these alterations can distinguish between PCLBCL, LT, primary cutaneous follicle centre lymphomas (PCFCL), and primary cutaneous marginal zone lymphomas (PCMZL).
Main Methods:
- Analysis of 22 tumor samples (9 PCFCL, 7 PCMZL, 6 PCLBCL, LT) using fluorescence in situ hybridization (FISH) and immunohistochemistry.
- Assessed alterations in CDKN2A, p14, p53, and Rb, alongside protein expression and phosphorylation levels.
Main Results:
- PCLBCL, LT exhibited frequent CDKN2A alterations (4/6), including deletions and trisomy 9.
- PCLBCL, LT also showed high frequencies of p53 (3/6) and Rb (3/6) deletions, with absent p16 expression and high phosphorylated Rb.
- PCFCL and PCMZL rarely showed CDKN2A alterations, though PCMZL consistently lacked p53 protein.
Conclusions:
- PCLBCL, LT is uniquely characterized by frequent aberrations in the CDKN2A network, affecting both p16/Rb and p14/p53 tumor suppressor pathways.
- CDKN2A network alterations and Rb phosphorylation status can differentiate PCLBCL, LT from PCMZL and potentially a subgroup of PCFCL.
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