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Updated: Jun 3, 2026

An Integrated Platform for Genome-wide Mapping of Chromatin States Using High-throughput ChIP-sequencing in Tumor Tissues
Published on: April 5, 2018
Approaches to target the genome and its epigenome in cancer
Nadine Chapman-Rothe1, Robert Brown
1Department of Oncology, Hammersmith Hospital Campus, Imperial College London, UK. nadine.rothe04@imperial.ac.uk
Abstract:
The term epigenetic landscape was coined by CH Waddington to describe how cell fates were established in development, visualized as valleys and ridges directing the irreversibility of cell type differentiation. It is now clear that normal differentiation control breaks down during tumor development and that all tumor types show aberrant regulation of the epigenetic code, including changes in DNA methylation, histone modification and microRNAs. This has led to much interest in the development of epigenetic cancer therapies to target this aberrant epigenetic regulation. Histone deacetylase and DNA methyltransferase inhibitors are now used in the treatment of certain hematological malignancies. However, their more general applicability to solid tumors may be limited by lack of specificity and delivery challenges. Approaches to overcome these limitations and how to develop more specific drugs are discussed. The use of RNAi in the context of genome regulation as well as the possibility to use polyamides and engineered zinc fingers to target master regulators in the future is examined. Ultimately, improved specificity of epigenetic therapies will require increased mapping of the aberrant epigenetic landscape in cancer and cancer-specific target validation using chemical epigenetic approaches.
Insights
Epigenetic therapies offer new cancer treatment avenues by targeting aberrant epigenetic codes. Improving drug specificity is key for broader application, especially in solid tumors.
Area of Science:
- Oncology
- Epigenetics
- Cancer Biology
Background:
- The epigenetic landscape governs cell fate during development.
- Cancer involves aberrant epigenetic code regulation, including DNA methylation, histone modification, and microRNAs.
- Current epigenetic therapies like HDAC and DNMT inhibitors show promise but face limitations.
Purpose of the Study:
- To review the role of epigenetic dysregulation in cancer.
- To discuss challenges and strategies for developing more specific epigenetic cancer therapies.
- To examine future directions in targeting epigenetic regulators.
Main Methods:
- Review of current epigenetic cancer therapies and their limitations.
- Discussion of strategies to enhance drug specificity and delivery.
- Examination of emerging approaches like RNAi, polyamides, and zinc fingers.
Main Results:
- Aberrant epigenetic regulation is a hallmark of all tumor types.
- Existing epigenetic drugs are effective in some hematological malignancies but limited in solid tumors.
- Lack of specificity and delivery challenges hinder broader application of current therapies.
Conclusions:
- Targeting the aberrant epigenetic landscape in cancer is crucial for therapeutic development.
- Overcoming specificity and delivery challenges is essential for effective epigenetic cancer therapies.
- Future strategies involve advanced molecular tools and precise target validation for improved treatment outcomes.
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