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Updated: Jun 3, 2026

A Semi-Quantitative Drug Affinity Responsive Target Stability (DARTS) assay for studying Rapamycin/mTOR interaction
Published on: August 27, 2019
Differing effects of rapamycin and mTOR kinase inhibitors on protein synthesis
Yilin Huo1, Valentina Iadevaia, Christopher G Proud
1School of Biological Sciences, University of Southampton, Southampton SO17 1BJ, UK.
Abstract:
mTOR (mammalian target of rapamycin) forms two distinct types of complex, mTORC (mTOR complex) 1 and 2. Rapamycin inhibits some of the functions of mTORC1, whereas newly developed mTOR kinase inhibitors interfere with the actions of both types of complex. We have explored the effects of rapamycin and mTOR kinase inhibitors on general protein synthesis and, using a new stable isotope-labelling method, the synthesis of specific proteins. In HeLa cells, rapamycin only had a modest effect on total protein synthesis, whereas mTOR kinase inhibitors decreased protein synthesis by approx. 30%. This does not seem to be due to the ability of mTOR kinase inhibitors to block the binding of eIFs (eukaryotic initiation factors) eIF4G and eIF4E. Analysis of the effects of the inhibitors on the synthesis of specific proteins showed a spectrum of behaviours. As expected, synthesis of proteins encoded by mRNAs that contain a 5'-TOP (5'-terminal oligopyrimidine tract) was impaired by rapamycin, but more strongly by mTOR kinase inhibition. Several proteins not known to be encoded by 5'-TOP mRNAs also showed similar behaviour. Synthesis of proteins encoded by 'non-TOP' mRNAs was less inhibited by mTOR kinase inhibitors and especially by rapamycin. The implications of our findings are discussed.
Insights
mTOR kinase inhibitors significantly reduce protein synthesis, impacting both general and specific protein production. Rapamycin has a more modest effect, primarily affecting 5'-TOP mRNA-encoded proteins.
Area of Science:
- Molecular Biology
- Cellular Biology
- Biochemistry
Background:
- The mammalian target of rapamycin (mTOR) pathway regulates cell growth and protein synthesis.
- mTOR forms two complexes: mTORC1 and mTORC2, with distinct functions.
- Rapamycin inhibits mTORC1, while mTOR kinase inhibitors affect both complexes.
Purpose of the Study:
- To investigate the differential effects of rapamycin and mTOR kinase inhibitors on protein synthesis.
- To analyze the impact on both general and specific protein synthesis using a novel stable isotope-labeling method.
Main Methods:
- Treatment of HeLa cells with rapamycin and mTOR kinase inhibitors.
- Measurement of total protein synthesis.
- Stable isotope-labeling to quantify synthesis of specific proteins.
- Analysis of eukaryotic initiation factor (eIF) binding.
Main Results:
- mTOR kinase inhibitors reduced total protein synthesis by approximately 30%, while rapamycin had a modest effect.
- Inhibition of 5 acronym{'-'}TOP mRNA translation was observed with both agents, more strongly with kinase inhibitors.
- Differential effects on specific protein synthesis were noted, with some non-TOP mRNA-encoded proteins also affected.
Conclusions:
- mTOR kinase inhibitors have a more profound impact on overall protein synthesis than rapamycin.
- The differential inhibition suggests complex regulation of protein synthesis by mTOR pathway components.
- Findings provide insights into the distinct roles of mTORC1 and mTORC2 in controlling protein production.
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