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Updated: Jun 3, 2026

Identification of Kinase-substrate Pairs Using High Throughput Screening
Published on: August 29, 2015
A phospho-proteomic screen identifies novel S6K1 and mTORC1 substrates revealing additional complexity in the
Katarzyna Jastrzebski1, Katherine M Hannan, Colin M House
1Research Division, Peter MacCallum Cancer Centre, Melbourne, Locked Bag 1, A'Beckett Street, Victoria 8006, Australia.
Abstract:
S6K1, a critical downstream substrate of mTORC1, has been implicated in regulating protein synthesis and a variety of processes that impinge upon cell growth and proliferation. While the role of the cytoplasmic p70(S6K1) isoform in the regulation of translation has been intensively studied, the targets and function of the nuclear p85(S6K1) isoform remain unclear. Therefore, we carried out a phospho-proteomic screen to identify novel p85(S6K1) substrates. Four novel putative p85(S6K1) substrates, GRP75, CCTβ, PGK1 and RACK1, and two mTORC1 substrates, ANXA4 and PSMA6 were identified, with diverse roles in chaperone function, ribosome maturation, metabolism, vesicle trafficking and the proteasome, respectively. The chaperonin subunit CCTβ was further investigated and the site of phosphorylation mapped to serine 260, a site located in the chaperonin apical domain. Consistent with this domain being involved in folding substrate interactions, we found that phosphorylation of serine 260 modulates chaperonin folding activity.
Insights
The nuclear p85 ribosomal S6 kinase 1 (S6K1) isoform
Area of Science:
- Molecular Biology
- Cell Biology
- Biochemistry
Background:
- Ribosomal protein S6 kinase 1 (S6K1) is a key mediator of mTORC1 signaling, regulating cell growth and protein synthesis.
- While the cytoplasmic p70(S6K1) isoform's role in translation is well-established, the nuclear p85(S6K1) isoform's functions and substrates remain largely unknown.
Purpose of the Study:
- To identify novel nuclear p85(S6K1) substrates using a phospho-proteomic screen.
- To elucidate the functional consequences of p85(S6K1) phosphorylation on its substrates.
Main Methods:
- Phospho-proteomic screening to identify p85(S6K1) targets.
- Site-directed mutagenesis and in vitro assays to investigate phosphorylation site function.
- Biochemical assays to assess chaperonin folding activity.
Main Results:
- Identified four novel p85(S6K1) substrates (GRP75, CCTβ, PGK1, RACK1) and two mTORC1 substrates (ANXA4, PSMA6).
- Determined that phosphorylation of the chaperonin subunit CCTβ at serine 260 modulates its folding activity.
- The identified substrates are involved in diverse cellular processes including chaperone function, metabolism, and proteasome activity.
Conclusions:
- The nuclear p85(S6K1) isoform phosphorylates diverse proteins involved in fundamental cellular processes.
- Phosphorylation of CCTβ by p85(S6K1) directly impacts chaperonin folding activity, suggesting a role in regulating protein homeostasis.
- This study expands the known functions of S6K1 into the nucleus, revealing new regulatory mechanisms in cell growth and protein synthesis.
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