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Updated: Jun 3, 2026

Characterize Disease-related Mutants of RAF Family Kinases by Using a Set of Practical and Feasible Methods
Published on: July 17, 2019
Mutation that blocks ATP binding creates a pseudokinase stabilizing the scaffolding function of kinase suppressor of
Jiancheng Hu1, Haiyang Yu, Alexandr P Kornev
1Department of Pathology and Immunology, Howard Hughes Medical Institute, Washington University School of Medicine, 660 South Euclid, Box 8118, St Louis, MO 63110, USA.
Abstract:
Because mutations in RAS and BRAF represent the most common mutations found in human tumors, identification of inhibitors has been a major goal. Surprisingly, new oncogenic BRAF specific inhibitors inhibit cells transformed with mutated BRAF but paradoxically stimulate the growth of cells transformed with RAS. Here, we show that the mechanism for activation is via drug-induced dimer formation between CRAF and kinase suppressor of Ras (KSR)1. To understand the function of KSR1, we generated a KSR1 mutant that cannot bind ATP but stabilizes the closed, active conformation of KSR1. Molecular modeling suggested that the mutant stabilizes the two hydrophobic spines critical for the closed active conformation. We, therefore, could use the mutant to discriminate between the scaffold versus kinase functions of KSR1. The KSR1 mutant bound constitutively to RAF and mitogen-activated protein kinase kinase (MEK) but could not reconstitute activity suggesting that the catalytic activity of KSR1 is required for its function. Analogous mutations in BRAF and CRAF allowed us to test the generality of the model. The mutation induced changes consistent with the active, closed conformation of both kinases and confirmed that BRAF functions distinctly from CRAF in the MAP kinase pathway. Not only does this work suggest that KSR1 may function as a kinase, we anticipate that the mutation that we generated may be broadly applicable to stabilize the closed conformation of other kinases many of which may also form dimers.
Insights
New BRAF inhibitors paradoxically stimulate RAS-transformed cells by inducing CRAF/KSR1 dimers. This study reveals kinase suppressor of Ras (KSR)1
Area of Science:
- Oncology
- Molecular Biology
- Biochemistry
Background:
- RAS and BRAF mutations are common in human tumors.
- BRAF inhibitors paradoxically stimulate RAS-transformed cells via CRAF/KSR1 dimerization.
- Understanding KSR1 function is crucial for targeted cancer therapy.
Purpose of the Study:
- Investigate the mechanism of RAS-transformed cell growth stimulation by BRAF inhibitors.
- Discriminate between scaffold and kinase functions of KSR1.
- Determine the role of KSR1 catalytic activity in the MAP kinase pathway.
Main Methods:
- Generated a catalytically inactive KSR1 mutant.
- Utilized molecular modeling to predict mutant conformation.
- Tested KSR1 mutant binding and activity with RAF and MEK.
- Introduced analogous mutations in BRAF and CRAF.
Main Results:
- KSR1 catalytic activity is required for its function.
- KSR1 mutant stabilizes the closed, active conformation.
- BRAF and CRAF exhibit distinct functions in the MAP kinase pathway.
- Drug-induced CRAF/KSR1 dimerization drives paradoxical cell growth.
Conclusions:
- KSR1 likely functions as a kinase, not just a scaffold.
- The generated KSR1 mutant can stabilize kinase closed conformations.
- This finding has broad implications for targeting other kinases.
- The study elucidates a novel mechanism of drug resistance in cancer therapy.
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