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Deciphering the Structural Effects of Activating EGFR Somatic Mutations with Molecular Dynamics Simulation
Published on: May 20, 2020
Mutations in the epidermal growth factor receptor (EGFR) gene in triple negative breast cancer: possible implications
Yvonne Hui-Fang Teng1, Wai-Jin Tan, Aye-Aye Thike
1Department of Pathology, Singapore General Hospital, Outram Road, Singapore 169608, Singapore.
Introduction:
Triple negative breast cancer is associated with poorer prognosis and unresponsiveness to endocrine and anti-HER2 directed agents. Despite emerging data supporting the use of polyADP-ribose polymerase (PARP) inhibitors, complete and durable responses are rare and exploration of additional targeted therapies is needed. Epidermal growth factor receptor (EGFR) is expressed in triple negative breast cancer and several clinical trials are testing the role of anti-EGFR directed therapy. However, the rate of EGFR mutations is poorly defined. We, therefore, sought to characterize EGFR mutations in triple negative breast cancers.
Methods:
Seventy samples were randomly chosen from a cohort of 653 triple negative breast tumours for EGFR mutation analysis. These samples were immunostained for EGFR protein expression and consisted of negatively stained and positively stained cases. DNA was extracted from paraffin blocks and polymerase chain reaction was performed to amplify exon regions 18 to 21 of the EGFR gene. Direct sequencing of the purified PCR products was performed.
Results:
EGFR mutations were found in 8 of 70 samples (11.4%). Mutations were predominantly exon 19 deletions (4 of 70 samples, 5.7%), which clustered in the region spanning codons 746 to 759 within the kinase domain of EGFR. Two types of exon 19 deletions were seen: a 15 nucleotide deletion (del E746-A750) (2 of 70 samples) and a 24 nucleotide deletion (del S752 - I759) (2 of 70 samples). Other exon 19 mutations observed were the inversion of the complementary strand (1 of 70 samples). Exon 21 mutations included missense substitution, L858R (1 of 70 samples) and T847I (2 of 70 samples). Mutations observed were independent of EGFR protein expression determined by immunohistochemical staining.
Conclusions:
This study is among the first to document the presence and estimate the prevalence of EGFR mutations in triple negative breast cancer. These findings have potential implications for the design of clinical trials involving anti-EGFR directed therapy which currently do not select for patients based on presence of activating EGFR mutations, which may hence be underpowered to detect significant benefit in unselected populations. More complete sampling of EGFR mutation status in triple negative breast cancer is needed to determine the true mutation rate.
Insights
This study identified epidermal growth factor receptor (EGFR) mutations in 11.4% of triple negative breast cancer (TNBC) cases. These findings are crucial for designing future clinical trials targeting EGFR in TNBC patients.
Area of Science:
- Oncology
- Genetics
- Molecular Biology
Background:
- Triple negative breast cancer (TNBC) has a poor prognosis and limited treatment options.
- While PARP inhibitors show promise, durable responses are rare, necessitating novel targeted therapies.
- Epidermal growth factor receptor (EGFR) is expressed in TNBC, but its mutation status is not well-defined.
Purpose of the Study:
- To characterize the prevalence and types of epidermal growth factor receptor (EGFR) mutations in triple negative breast cancer (TNBC).
Main Methods:
- Analyzed EGFR mutations in exon 18-21 from 70 TNBC tumor samples.
- Utilized polymerase chain reaction (PCR) and direct sequencing for mutation detection.
- Correlated mutations with EGFR protein expression via immunohistochemical staining.
Main Results:
- EGFR mutations were detected in 11.4% (8/70) of TNBC samples.
- Exon 19 deletions (5.7%) were the most common, including specific nucleotide deletions.
- Exon 21 mutations (L858R, T847I) were also identified, independent of EGFR protein levels.
Conclusions:
- This study provides initial data on EGFR mutation prevalence in TNBC.
- Findings suggest that current anti-EGFR clinical trials may be underpowered due to unselected patient populations.
- Further comprehensive analysis of EGFR mutation status is essential for optimizing targeted therapy in TNBC.
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