Related Experiment Video
Updated: Jun 2, 2026

In Silico Modeling Method for Computational Aquatic Toxicology of Endocrine Disruptors: A Software-Based Approach Using QSAR Toolbox
Published on: August 28, 2019
Quantitative read-across for predicting the acute fish toxicity of organic compounds
Gerrit Schüürmann1, Ralf-Uwe Ebert, Ralph Kühne
1UFZ Department of Ecological Chemistry, Helmholtz Centre for Environmental Research, Permoserstr. 15, 04318 Leipzig, Germany. gerrit.schuurmann@ufz.de
Abstract:
Read-across enables the interpolation of a property for a target chemical from respective experimental data of sufficiently similar compounds. Employing a set of 692 organic compounds with experimental values for the 96 h fish toxicity toward the fathead minnow in terms of LC(50) (lethal concentration 50%) values, a read-across method has been developed that is based on atom-centered fragments (ACFs) for evaluating chemical similarity. Prediction of log LC(50) proceeds through reading across the toxicity enhancement over predicted narcosis-level toxicity in terms of the respective logarithmic ratio, log T(e), and adding the respective baseline narcosis LC(50) estimated from log K(ow) (octanol/water partition coefficient). Depending on the minimum similarity imposed on a compound to serve as read-across basis for the target chemical, three different standard settings have been introduced, allowing one to perform screening-level estimations as well as predictions with intermediate and good confidence. The respective squared correlation coefficients (r(2)) are 0.73, 0.78, and 0.87, with root-mean square errors (rms) of 0.73, 0.60, and 0.39 log units, respectively. As a general trend, increasing the ACF minimum similarity increases the prediction quality at the cost of decreasing the application range. The method has the potential to assist in the predictive evaluation of fish toxicity for regulatory purposes such as under the REACH legislation.
More Related Videos
16:02Demonstration of the Sequence Alignment to Predict Across Species Susceptibility Tool for Rapid Assessment of Protein Conservation
Published on: February 10, 2023
09:01A High-throughput Assay for the Prediction of Chemical Toxicity by Automated Phenotypic Profiling of Caenorhabditis elegans
Published on: March 14, 2019