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Updated: Jun 2, 2026

Detection and Genogrouping of Noroviruses from Children's Stools By Taqman One-step RT-PCR
Published on: July 22, 2012
Genetic diversity and emergence of norovirus GII/4-2006b in Japan during 2006-2007
Shuvra Kanti Dey1, Tung Gia Phan, Masashi Mizuguchi
1Department of Developmental Medical Sciences, Institute of International Health, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Insights
Norovirus (NoV) infections are a significant cause of acute gastroenteritis in young children. This study found NoV GII/4 2006b variants were predominant in Japanese pediatric cases during 2006-2007.
Area of Science:
- Virology
- Pediatric Infectious Diseases
- Public Health
Background:
- Noroviruses (NoV) are a leading cause of acute gastroenteritis in infants and young children globally.
- Understanding the epidemiology of NoV is crucial for developing effective prevention and control strategies.
Purpose of the Study:
- To investigate the prevalence and genetic diversity of Norovirus infections in pediatric patients with acute gastroenteritis in Japan.
- To identify the predominant Norovirus genotypes circulating in this population during the study period.
Main Methods:
- Collection of 628 fecal specimens from infants and children with acute gastroenteritis across five Japanese locations (July 2006-June 2007).
- Detection of Norovirus using reverse transcription-polymerase chain reaction (RT-PCR).
- Molecular characterization of Norovirus strains through nucleotide and amino acid sequencing.
Main Results:
- A total of 15.6% of specimens tested positive for Norovirus.
- Norovirus GII was the predominant strain, accounting for 15.5% of cases.
- Norovirus GII/4 2006b variants were the most prevalent genotype (89% of GII strains), with other genotypes including GII/3, GII/7, and GII/2.
- Norovirus infections peaked during the winter season.
Conclusions:
- Norovirus GII/4 2006b variants were the dominant cause of acute gastroenteritis in the Japanese pediatric population studied.
- Norovirus continues to represent a significant disease burden in this demographic.
- The findings highlight the importance of ongoing surveillance for Norovirus genotypes and seasonality.
Background:
Noroviruses (NoV) are important causes of acute gastroenteritis in infants and young children. This study investigated the prevalence of NoV infections in infants and children with acute gastroenteritis in Japan from July 2006 to June 2007.
Methods:
A total of 628 fecal specimens were collected from infants and children with acute gastroenteritis in five different places (Maizuru, Tokyo, Sapporo, Saga and Osaka), Japan during the period of July 2006 to June 2007. All fecal specimens were examined for NoV by reverse transcription-polymerase chain reaction. Molecular analysis of NoV was carried out by sequencing methods.
Results:
From 628 fecal specimens tested, 15.6% (99 of 628) were positive for NoV. Of these, NoV GII most predominant, with a prevalence of 15.5% (97 of 99). Analysis of nucleotide and amino acid sequences revealed that NoVGII strains comprised GII/4 (89%), GII/3 (6.4%), GII/7 (2.3%), and GII/2 (2.3%) genotypes. Among NoVGII/4 strains, all of them belonged to genotype GII/4 2006b variants. Our results clearly indicated that NoV infections were most commonly observed in winter seasons in Japan.
Conclusions:
In conclusion, this study shows the predominance of NoVGII/4 2006b variants and NoV is still burden of disease among Japanese pediatric population.
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