Transcriptome of Proteus mirabilis in the murine urinary tract: virulence and nitrogen assimilation gene expression
Melanie M Pearson1, Alejandra Yep, Sara N Smith
1Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA.
Abstract:
The enteric bacterium Proteus mirabilis is a common cause of complicated urinary tract infections. In this study, microarrays were used to analyze P. mirabilis gene expression in vivo from experimentally infected mice. Urine was collected at 1, 3, and 7 days postinfection, and RNA was isolated from bacteria in the urine for transcriptional analysis. Across nine microarrays, 471 genes were upregulated and 82 were downregulated in vivo compared to in vitro broth culture. Genes upregulated in vivo encoded mannose-resistant Proteus-like (MR/P) fimbriae, urease, iron uptake systems, amino acid and peptide transporters, pyruvate metabolism enzymes, and a portion of the tricarboxylic acid (TCA) cycle enzymes. Flagella were downregulated. Ammonia assimilation gene glnA (glutamine synthetase) was repressed in vivo, while gdhA (glutamate dehydrogenase) was upregulated in vivo. Contrary to our expectations, ammonia availability due to urease activity in P. mirabilis did not drive this gene expression. A gdhA mutant was growth deficient in minimal medium with citrate as the sole carbon source, and loss of gdhA resulted in a significant fitness defect in the mouse model of urinary tract infection. Unlike Escherichia coli, which represses gdhA and upregulates glnA in vivo and cannot utilize citrate, the data suggest that P. mirabilis uses glutamate dehydrogenase to monitor carbon-nitrogen balance, and this ability contributes to the pathogenic potential of P. mirabilis in the urinary tract.
Insights
Proteus mirabilis upregulates key virulence genes like urease and fimbriae during urinary tract infections in mice. Glutamate dehydrogenase (gdhA) plays a crucial role in its pathogenesis and nutrient utilization.
Area of Science:
- Microbiology
- Infectious Diseases
- Molecular Biology
Background:
- Proteus mirabilis is a significant cause of complicated urinary tract infections (cUTIs).
- Understanding P. mirabilis gene expression during infection is crucial for developing targeted therapies.
Purpose of the Study:
- To analyze the in vivo gene expression profile of P. mirabilis during a mouse model of urinary tract infection.
- To investigate the role of ammonia assimilation pathways, specifically glutamate dehydrogenase (gdhA), in P. mirabilis pathogenesis.
Main Methods:
- Transcriptional analysis using microarrays on P. mirabilis RNA isolated from infected mouse urine at multiple time points.
- Construction and characterization of a gdhA mutant in P. mirabilis.
- Growth assays in minimal media and fitness studies in a mouse UTI model.
Main Results:
- In vivo, P. mirabilis upregulated genes for mannose-resistant Proteus-like (MR/P) fimbriae, urease, iron uptake, and central metabolism (TCA cycle).
- Flagellar genes were downregulated in vivo.
- Ammonia assimilation gene glnA was repressed, while glutamate dehydrogenase gene gdhA was upregulated in vivo.
- A gdhA mutant exhibited growth defects in minimal media with citrate and a significant fitness defect in the mouse UTI model.
Conclusions:
- P. mirabilis employs distinct gene expression strategies in vivo compared to in vitro conditions.
- Glutamate dehydrogenase (gdhA) is essential for P. mirabilis's ability to utilize citrate and contributes significantly to its pathogenic potential in the urinary tract.
- Unlike E. coli, P. mirabilis appears to utilize gdhA for monitoring carbon-nitrogen balance during infection.
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