ATP site-directed inhibitors of protein kinase CK2: an update

S Sarno1, E Papinutto, C Franchin

  • 1Department of Biological Chemistry and CNR Institute of Neurosciences, University of Padova, Italy.

Insights

Specific CK2 inhibitors induce cancer cell apoptosis and show promise in clinical trials. Their efficacy depends on hydrophobic interactions, and new drug development can leverage their scaffolds for targeting other kinases.

Area of Science:

  • Biochemistry and Molecular Biology
  • Cancer Therapeutics
  • Drug Discovery

Background:

  • Casein kinase 2 (CK2) is a constitutively active protein kinase overexpressed in many cancers, representing a 'non oncogene addiction' target.
  • Specific ATP-site directed CK2 inhibitors induce apoptosis in cancer cells selectively, with one candidate, CX-4945, entering clinical trials.

Purpose of the Study:

  • To analyze the structural basis of CK2 inhibitor efficacy and selectivity.
  • To explore the potential of CK2 inhibitor scaffolds for developing inhibitors of other protein kinases.

Main Methods:

  • Analysis of 3D structures of CK2 inhibitors bound to CK2 catalytic subunits.
  • Structure-activity relationship studies involving halogen substitutions and specific amino acid mutations (Val66, Ile174) in CK2.
  • Kinase selectivity profiling using a panel of over 60 kinases and calculating Promiscuity Scores.

Main Results:

  • CK2 inhibitor efficacy is linked to hydrophobic interactions within a constrained binding cavity.
  • Potency of tetra-halogenated benzimidazoles increases with halogen size (Cl < Br < I) and decreases with mutations of Val66 and Ile174.
  • Quinalizarin exhibits the highest selectivity (Promiscuity Score 9.47); medium/high promiscuity inhibitors can target multiple kinases.

Conclusions:

  • The structural features of CK2 inhibitors dictate their potency and selectivity.
  • CK2 inhibitor scaffolds can be rationally adapted for developing selective inhibitors against kinases like PIMs, DYRKs, HIPK2, PKD, and ERK8.

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