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Updated: Jun 2, 2026

A High Resolution Method to Monitor Phosphorylation-dependent Activation of IRF3
Published on: January 24, 2016
RANK signaling induces interferon-stimulated genes in the fetal thymic stroma
Daisuke Ohshima1, Junwen Qin, Hiroyasu Konno
1Division of Cellular and Molecular Biology, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokane-dai, Minato-ku, Tokyo, Japan.
Abstract:
Medullary thymic epithelial cells (mTECs) are essential for thymic negative selection to prevent autoimmunity. Previous studies show that mTEC development is dependent on the signal transducers TRAF6 and NIK. However, the downstream target genes of signals controlled by these molecules remain unknown. We performed a microarray analysis on mRNAs down-regulated by deficiencies in TRAF6 or functional NIK in an in vitro organ culture of fetal thymic stromata (2DG-FTOC). An in silico analysis of transcription factor binding sites in plausible promoter regions of differentially expressed genes suggests that STAT1 is involved in TRAF6- and NIK-dependent gene expression. Indeed, the signal of RANK, a TNF receptor family member that activates TRAF6 and NIK, induces the activation of STAT1 in 2DG-FTOC. Moreover, RANK signaling induces the up-regulation of interferon (IFN)-stimulated gene (ISG) expression, suggesting that the RANKL-dependent activation of STAT1 up-regulates ISG expression. The RANKL-dependent expression levels of ISGs were reduced but not completely abolished in interferon α receptor 1-deficient (Ifnar1(-/-)) 2DG-FTOC. Our data suggest that RANK signaling induces ISG expression in both type I interferon-independent and interferon-dependent mechanisms.
Insights
Medullary thymic epithelial cells (mTECs) are crucial for preventing autoimmunity. This study reveals that RANK signaling activates STAT1, up-regulating interferon-stimulated genes (ISGs) through both interferon-dependent and independent pathways.
Area of Science:
- Immunology
- Cell Biology
- Molecular Biology
Background:
- Medullary thymic epithelial cells (mTECs) are vital for immune tolerance via thymic negative selection.
- mTEC development relies on signal transducers TRAF6 and NIK, but their downstream targets are unknown.
- Understanding these pathways is key to preventing autoimmune diseases.
Purpose of the Study:
- To identify downstream target genes of TRAF6 and NIK in mTEC development.
- To elucidate the role of STAT1 in TRAF6- and NIK-dependent gene expression.
- To investigate the mechanism of RANK signaling in interferon-stimulated gene (ISG) expression.
Main Methods:
- Microarray analysis of mRNAs in TRAF6 or NIK-deficient fetal thymic organ cultures (2DG-FTOC).
- In silico analysis of transcription factor binding sites in differentially expressed genes.
- Stimulation of RANK signaling and assessment of STAT1 activation and ISG expression in wild-type and Ifnar1(-/-) 2DG-FTOC.
Main Results:
- STAT1 is implicated in TRAF6- and NIK-dependent gene expression.
- RANK signaling activates STAT1 in 2DG-FTOC.
- RANK signaling up-regulates ISG expression via both type I interferon-dependent and independent mechanisms.
Conclusions:
- RANK signaling, through STAT1 activation, modulates ISG expression in mTECs.
- This pathway contributes to immune tolerance by regulating gene expression.
- The findings offer insights into potential therapeutic targets for autoimmune disorders.
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