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Profiling Ubiquitin and Ubiquitin-like Dependent Post-translational Modifications and Identification of Significant Alterations
Published on: November 7, 2019
Identification of a viral gene encoding a ubiquitin-like protein
1Department of Entomology, Texas Agricultural Experiment Station, College Station 77843.
Abstract:
The baculovirus Autographa californica nuclear polyhedrosis virus (AcMNPV, which is representative of the MNPV subtype in which the virions may contain many nucleocapsids within a single viral envelope) encodes a protein, v-ubi, that has 76% identity with the eukaryotic protein ubiquitin. Transcriptional mapping indicated that the gene for v-ubi was transcribed during the late phase of viral infection. Two transcriptional start sites potentially encoding v-ubi were identified. Both sites were contained within a sequence motif common to baculovirus late genes. A recombinant virus, AcUbi-beta Gal, encoding a ubiquitin-beta-galactosidase fusion protein was constructed to monitor the temporal regulation of v-ubi gene during viral infection. The fusion protein was expressed maximally at 14-18 hr postinfection, consistent with its classification as a late protein. The amount of ubiquitin-beta-galactosidase fusion protein that accumulated in AcUbi-beta Gal-infected cells by 48 hr postinfection was approximately 14% of the level of beta-galactosidase that was synthesized under control of the polyhedrin promoter. Transcriptional analysis confirmed that synthesis of the fusion protein was directed by the v-ubi gene promoter. AcUbi-beta Gal also produced normal levels of authentic viral ubiquitin message. Southern blot analysis of AcUbi-beta Gal and 15 additional isolates revealed that the fusion sequences had not recombined at the ubiquitin locus. A polyubiquitin gene was isolated and sequenced from Spodoptera frugiperda, a lepidopteran host cell line for AcMNPV. The predicted amino acid sequence of the product of the host gene is identical to animal ubiquitin.
Insights
The baculovirus Autographa californica nuclear polyhedrosis virus (AcMNPV) encodes a ubiquitin-like protein (v-ubi) during late-stage infection. Researchers confirmed its temporal expression using a novel ubiquitin-beta-galactosidase fusion protein.
Area of Science:
- Molecular Virology
- Insect Pathology
- Biochemistry
Background:
- Baculoviruses, such as AcMNPV, are DNA viruses used extensively for protein expression in insect cells.
- AcMNPV encodes a protein, v-ubi, with significant homology to eukaryotic ubiquitin.
- Understanding viral gene regulation is crucial for optimizing baculovirus expression systems.
Purpose of the Study:
- To characterize the temporal expression of the AcMNPV v-ubi gene.
- To investigate the function and regulation of the viral ubiquitin-like protein.
- To develop a tool for monitoring baculovirus gene expression during infection.
Main Methods:
- Construction of a recombinant baculovirus (AcUbi-beta Gal) expressing a ubiquitin-beta-galactosidase fusion protein.
- Temporal analysis of fusion protein expression post-infection using Western blotting and enzyme assays.
- Transcriptional mapping and Southern blot analysis to confirm gene locus and expression patterns.
Main Results:
- The v-ubi gene is transcribed during the late phase of AcMNPV infection, with expression peaking at 14-18 hours post-infection.
- The ubiquitin-beta-galactosidase fusion protein accumulated to significant levels, demonstrating the efficacy of the v-ubi promoter.
- Recombinant viral sequences remained stable, and normal viral ubiquitin message was produced.
- The host cell polyubiquitin gene sequence was determined and found to be identical to animal ubiquitin.
Conclusions:
- The v-ubi gene is a bona fide late gene in the AcMNPV life cycle.
- The AcUbi-beta Gal system provides a reliable method for studying baculovirus gene expression dynamics.
- The viral ubiquitin-like protein shares high identity with host and animal ubiquitin, suggesting potential functional roles in viral pathogenesis or host interaction.
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