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Updated: Jun 2, 2026

Continuous Fluorescence-Based Endonuclease-Coupled DNA Methylation Assay to Screen for DNA Methyltransferase Inhibitors
Published on: August 5, 2022
Effects of DNA methyltransferase 1 inhibition on esophageal squamous cell carcinoma
Shu-Lei Zhao1, Sheng-Tao Zhu, Xiaowen Hao
1Department of Gastroenterology, Beijing Friendship Hospital-Capital Medical University, Yongan Road 95, Beijing, China.
Abstract:
To explore the role of DNA methyltransferase 1 (DNMT1) in esophageal squamous cell carcinoma (ESCC) and the potential of DNMT1-targeted small interfering RNA as ESCC therapy, we examined expression changes of DNMT1 in ESCC and investigated the effect of DNMT1 knockdown by RNA interference in a human ESCC cell line, KYSE30. DNMT1 messenger RNA was over-expressed in seven out of 12 ESCC samples, and the percentage of cells expressing DNMT1 was significantly higher in ESCC tissues compared with paired non-cancerous tissues. DNMT1 protein levels correlated with lymph node metastasis, but exhibited no correlation with sex, age, tumor site, or tumor differentiation. Knockdown of DNMT1 in KYSE30 cells using RNA interference resulted in a reduction of promoter methylation and re-expression of methyl-guanine methyl-transferase and retinoic acid receptors beta, inhibition of cell proliferation/viability and induction of cell apoptosis. These results indicate that DNMT1 over-expression is involved in ESCC and correlated with lymph node metastasis. Knockdown of DNMT1 led to promoter demethylation and re-expression of several tumor suppressor genes thereby inhibiting cell proliferation/viability and inducing cell apoptosis.
Insights
DNA methyltransferase 1 (DNMT1) is overexpressed in esophageal squamous cell carcinoma (ESCC) and linked to metastasis. Targeting DNMT1 with RNA interference suppressed ESCC cell growth and induced apoptosis.
Area of Science:
- Oncology
- Molecular Biology
- Epigenetics
Background:
- Esophageal squamous cell carcinoma (ESCC) is a significant global health concern.
- Aberrant DNA methylation is implicated in cancer development, with DNA methyltransferase 1 (DNMT1) playing a key role.
- Understanding DNMT1's role in ESCC is crucial for developing targeted therapies.
Purpose of the Study:
- To investigate the expression levels of DNMT1 in ESCC tissues.
- To evaluate the therapeutic potential of DNMT1-targeted small interfering RNA (siRNA) in ESCC.
- To elucidate the molecular mechanisms underlying DNMT1's function in ESCC.
Main Methods:
- Quantitative analysis of DNMT1 messenger RNA (mRNA) and protein expression in ESCC samples.
- RNA interference (RNAi) was used to knockdown DNMT1 in the human ESCC cell line KYSE30.
- Assessment of cell proliferation, viability, apoptosis, and promoter methylation status following DNMT1 knockdown.
Main Results:
- DNMT1 mRNA was overexpressed in a majority of ESCC samples compared to non-cancerous tissues.
- DNMT1 protein levels showed a correlation with lymph node metastasis in ESCC patients.
- DNMT1 knockdown in KYSE30 cells led to reduced promoter methylation, re-expression of tumor suppressor genes (e.g., methyl-guanine methyl-transferase, retinoic acid receptors beta), inhibited cell proliferation/viability, and induced apoptosis.
Conclusions:
- DNMT1 overexpression is a common event in ESCC and is associated with lymph node metastasis.
- Targeting DNMT1 using RNA interference demonstrates therapeutic potential by reversing epigenetic dysregulation and inhibiting tumor progression.
- DNMT1 knockdown offers a promising strategy for ESCC treatment by reactivating tumor suppressor genes and inducing cancer cell death.
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