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Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
TNFRSF1A coding variants in multiple sclerosis
An Goris1, Niels Fockaert, Leentje Cosemans
1Laboratory for Neuroimmunology, Section of Experimental Neurology, Katholieke Universiteit Leuven, Herestraat 49 Bus 1022, 3000 Leuven, Belgium. an.goris@med.kuleuven.be
Abstract:
Patients with the autoinflammatory disease Tumour Necrosis Factor receptor-associated periodic syndrome (TRAPS) who suffer from demyelinating disease have been described, and one of the milder TRAPS mutations (R92Q in the TNFRSF1A gene) has been suggested as a risk factor for multiple sclerosis (MS). In a study population of 967 MS patients and 1022 controls, we replicate association [P=5×10⁻⁴, 3% in patients versus 1% in controls, OR=2.26 (95% CI 1.41-3.61)], which appears independent of an established common risk variant in the same gene. No other non-synonymous variants in the same allele frequency range influencing risk of MS were observed.
Insights
The R92Q mutation in the TNFRSF1A gene, linked to Tumour Necrosis Factor receptor-associated periodic syndrome (TRAPS), is a risk factor for multiple sclerosis (MS). This finding was replicated in a study of MS patients and controls.
Area of Science:
- Genetics
- Neuroimmunology
- Autoinflammatory Diseases
Background:
- Tumour Necrosis Factor receptor-associated periodic syndrome (TRAPS) is an autoinflammatory disease.
- Some TRAPS patients exhibit demyelinating diseases.
- The TNFRSF1A R92Q mutation, a mild TRAPS variant, is hypothesized to increase multiple sclerosis (MS) risk.
Purpose of the Study:
- To investigate the association between the TNFRSF1A R92Q mutation and multiple sclerosis (MS) risk.
- To determine if this association is independent of other known risk variants in the TNFRSF1A gene.
Main Methods:
- Case-control study design.
- Genotyping of 967 MS patients and 1022 controls for the TNFRSF1A R92Q mutation.
- Statistical analysis including odds ratio (OR) and confidence intervals (CI).
Main Results:
- Replication of the association between the TNFRSF1A R92Q mutation and MS risk (P=5×10⁻⁴, OR=2.26).
- The mutation was present in 3% of MS patients versus 1% of controls.
- The observed association was independent of a previously established common risk variant in the same gene.
- No other non-synonymous variants in TNFRSF1A within the studied allele frequency range influenced MS risk.
Conclusions:
- The TNFRSF1A R92Q mutation is a risk factor for developing multiple sclerosis.
- This genetic risk appears independent of other known common variants in the TNFRSF1A gene.
- Further research into the role of TNFRSF1A variants in MS pathogenesis is warranted.
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