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Updated: Jun 2, 2026

Methyl-binding DNA capture Sequencing for Patient Tissues
Published on: October 31, 2016
Epigenetic inactivation of the SFRP1 gene in esophageal squamous cell carcinoma
Ying Meng1, Qing-Gang Wang, Jun-Xiong Wang
1Department of Gastroenterology, Beijing Friendship Hospital Affiliated to the Capital Medical University, 95 Yong'an Road, 100050 Beijing, China.
Introduction:
The secreted frizzled-related protein 1 (SFRP1) gene, as a Wnt signaling modulator, is frequently inactivated by promoter methylation in many tumors including gastric cancer, breast cancer, oral squamous cell carcinoma, and esophageal adenocarcinoma. However, the role of SFRP1 in esophageal squamous cell carcinoma (ESCC) is not clear. In this study, we investigated the epigenetic inactivation of the SFRP1 gene in ESCC.
Methods:
Nine ESCC cell lines, two immortalized human esophageal epithelial cell lines, twenty ESCC tissues, and paired adjacent nontumor tissues were analyzed in the study. Methylation-specific polymerase chain reaction (PCR), bisulfite sequencing, reverse-transcription PCR, immunohistochemistry, and chromatin immunoprecipitation assay were used to detect SFRP1 promoter methylation, expression of the SFRP1 gene, and histone modification in the SFRP1 promoter region.
Results:
The SFRP1 promoter was found to be highly methylated in 95% (19/20) of the ESCC tissues and in nine ESCC cell lines, compared with 65% (13/20) of the paired nontumor tissues. Moreover, we confirmed that complete methylation of the SFRP1 gene promoter was correlated with its greatly reduced expression level. After individual treatment with 5-aza-2'-deoxycytidine (DAC) and trichostatin A (TSA), the messenger RNA (mRNA) level of the SFRP1 gene was not obviously rescued in the EC9706 cell line. Combined incubation with DAC and TSA can, however, substantially increase the SFRP1 mRNA expression level in the EC9706 cell line. Chromatin immunoprecipitation assay showed that acetylated histone H3 and H4 were found in the SFRP1 promoter region.
Conclusion:
Promoter hypermethylation of SFRP1 is a frequent event in ESCC. Promoter methylation and histone acetylation may cooperatively regulate expression of the SFRP1 gene.
Insights
Secreted frizzled-related protein 1 (SFRP1) gene promoter hypermethylation frequently inactivates SFRP1 in esophageal squamous cell carcinoma (ESCC). Epigenetic modifications, including DNA methylation and histone acetylation, cooperatively regulate SFRP1 expression in ESCC.
Area of Science:
- Oncology
- Epigenetics
- Molecular Biology
Background:
- Secreted frizzled-related protein 1 (SFRP1) acts as a Wnt signaling modulator.
- SFRP1 inactivation via promoter methylation is common in various cancers.
- The role of SFRP1 in esophageal squamous cell carcinoma (ESCC) remains unclear.
Purpose of the Study:
- To investigate the epigenetic inactivation of the SFRP1 gene in ESCC.
- To determine the correlation between SFRP1 promoter methylation and its expression in ESCC.
- To explore the role of histone modifications in SFRP1 regulation in ESCC.
Main Methods:
- Analysis of SFRP1 promoter methylation using methylation-specific PCR and bisulfite sequencing.
- Assessment of SFRP1 gene expression via reverse-transcription PCR and immunohistochemistry.
- Investigation of histone modifications at the SFRP1 promoter using chromatin immunoprecipitation assays.
Main Results:
- SFRP1 promoter hypermethylation was observed in 95% of ESCC tissues and all ESCC cell lines.
- SFRP1 promoter methylation strongly correlated with reduced SFRP1 gene expression.
- Combined treatment with DAC and TSA restored SFRP1 mRNA expression, indicating a role for DNA methylation and histone acetylation.
Conclusions:
- Promoter hypermethylation of SFRP1 is a frequent epigenetic event in ESCC.
- DNA methylation and histone acetylation cooperatively regulate SFRP1 gene expression in ESCC.
- SFRP1 may serve as a potential epigenetic target for ESCC therapy.
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