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[Genetic environments of bla(CTX-M) genes located on conjugative plasmids of Enterobacteriaceae nosocomial isolates
Abstract:
The study showed that bla(CTX-M) genes were present in the genomes of 71% of cephalosporin resistant Enterobacteriaceae nosocomial isolates (n=833) collected in Russian hospitals within 2003-2007, including 91% of E.coli, 90% of Klebsiella spp., 38% of Enterobacter spp., 31% of Citrobacter spp. (n=9), and 36% of the other Enterobacteriaceae species. The genes belonging to the following subtypes (clusters) were identified: bla(CTX-M-1) (529 bla(CTX-M-15) genes; 25 bla(CTX-M-3) genes; 1 bla(CTX-M-22) gene, 1 bla(CTX-M-23) gene, and 1 bla(CTX-M-34) gene); bla(CTX-M-2) (1 bla(CTX-M-2) gene, and 4 bla(CTX-M-5) genes), and bla(CTX-M-9) (2 bla(CTX-M-9) genes, and 28 bla(CTX-M-14) genes). It was shown that bla(CTX-M) genes were located on high-molecular weight (60-160 bp) conjugative plasmids belonging mainly to the incompatibility groups IncF, IncL/M and IncA/C (bla(CTX-M-15) gene); IncL/M(bla(CTX-M-3) gene); and IncF, IncL/Mand IncI1-ly (CTX-M-14 gene). The gene environments of bla(CTX-M) genes were shown specific for the subtype of the genes. A mobile genetic element ISEcp1 (in some cases deleted or inserted by IS26, IS1, IS10, resTn2, or resTn3 sequences, in direct or reverse position) were detected upstream of bla(CTX-M-3), bla(CTX-M-14), and bla(CTX-M-15) genes. A special characteristic was the sequence between ISEcp1 and bla(CTX-M) gene: 48 bp for bla(CTX-M-15) (except 1 E.coli isolate having such a sequence deleted by 3 bp); 127 bp for bla(CTX-M-3); 42 bp for bla(CTX-M-14). Downstream of bla(CTX-M) and bla(CTX-M-15) genes in the major bacterial isolates orf477 mucA and Delta orf477-Delta mucA sequences were detected respectively. Two isolates had additional Delta orf3 insertion inside of Delta orf477-Delta mucA sequence. Insertion sequence IS903 (intact or deleted) was detected downstream of bla(CTX-M-14) gene. Unlike the others, bla(CTX-M-2) and bla(CTX-M-9) genes were located inside of ISCR1 mobile element, downstream of class 1 integron and orf513 sequence.
Insights
The bla(CTX-M) gene, conferring cephalosporin resistance in Enterobacteriaceae, was found in 71% of hospital isolates. These resistance genes are often located on mobile plasmids and associated with mobile genetic elements like ISEcp1.
Area of Science:
- Microbiology
- Genetics
- Molecular Biology
Background:
- Cephalosporin resistance in Enterobacteriaceae is a growing public health concern.
- The bla(CTX-M) gene is a major mechanism of this resistance.
- Understanding the genetic basis and dissemination of bla(CTX-M) is crucial for infection control.
Purpose of the Study:
- To investigate the prevalence and genetic characteristics of bla(CTX-M) genes in Enterobacteriaceae nosocomial isolates.
- To identify the specific bla(CTX-M) subtypes and their associated mobile genetic elements.
- To determine the plasmid location and gene environments of these resistance genes.
Main Methods:
- Genomic analysis of 833 Enterobacteriaceae nosocomial isolates collected from Russian hospitals (2003-2007).
- Identification of bla(CTX-M) gene subtypes using molecular methods.
- Plasmid analysis to determine incompatibility groups and location of bla(CTX-M) genes.
- Investigation of upstream and downstream genetic elements, including insertion sequences and mobile genetic elements.
Main Results:
- bla(CTX-M) genes were detected in 71% of cephalosporin-resistant Enterobacteriaceae isolates.
- bla(CTX-M-15) was the most prevalent subtype, followed by bla(CTX-M-14), bla(CTX-M-3), and others.
- Genes were located on conjugative plasmids (IncF, IncL/M, IncA/C, IncI1-ly).
- Specific mobile genetic elements, notably ISEcp1, were found upstream of several bla(CTX-M) subtypes, with characteristic spacer sequences.
- Downstream sequences included orf477, mucA, and IS903, with bla(CTX-M-2) and bla(CTX-M-9) located within ISCR1.
Conclusions:
- bla(CTX-M) genes are highly prevalent in Russian hospital-acquired Enterobacteriaceae infections.
- The genetic context and plasmid location of bla(CTX-M) genes facilitate their spread.
- Specific mobile genetic elements play a significant role in the mobilization and expression of bla(CTX-M) genes.
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