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Synthesis of Information-bearing Peptoids and their Sequence-directed Dynamic Covalent Self-assembly
Published on: February 6, 2020
4-Amino-3-ammonio-pyridinium dinitrate
Madhukar Hemamalini1, Hoong-Kun Fun
1X-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia.
The crystal structure of C(5)H(9)N(3) (2+)·2NO(3) (-) reveals a 3D network formed by hydrogen bonds between cations and anions. Pyridinium rings further stabilize this structure through π–π interactions.
Area of Science:
- Crystallography
- Supramolecular Chemistry
Background:
- Understanding the intermolecular forces that dictate crystal packing is crucial in materials science.
- Hydrogen bonding and π–π interactions are key non-covalent forces influencing crystal lattice formation.
Purpose of the Study:
- To elucidate the crystal structure of the title compound, C(5)H(9)N(3) (2+)·2NO(3) (-).
- To identify and analyze the intermolecular interactions responsible for stabilizing the crystal network.
Main Methods:
- Single-crystal X-ray diffraction was employed to determine the three-dimensional arrangement of atoms.
- Analysis of the crystal structure involved identifying hydrogen bonds (N-H⋯O, C-H⋯O) and π–π stacking interactions.
Main Results:
- The crystal structure consists of organic cations (C(5)H(9)N(3) (2+)) and nitrate anions (NO(3) (-)).
- A robust three-dimensional network is formed through extensive inter-molecular hydrogen bonds.
- Stabilization of the crystal lattice is further achieved by π–π interactions between adjacent pyridinium rings, with a centroid-centroid distance of 3.775(4) Å.
Conclusions:
- The crystal structure of C(5)H(9)N(3) (2+)·2NO(3) (-) is characterized by a 3D network driven by hydrogen bonding.
- π–π interactions between pyridinium rings play a significant role in the overall crystal stabilization.
Related Concept Videos
1° Amines to Diazonium or Aryldiazonium Salts: Diazotization with NaNO2 Overview
The nitrous acid is unstable. Hence, it is formed in situ from a solution of sodium nitrite and cold aqueous acids such as hydrochloric or sulfuric acid. In an acidic solution, the –OH group of nitrous acid undergoes protonation to give oxonium ion, followed by water loss...
1° Amines to Diazonium or Aryldiazonium Salts: Diazotization with NaNO2 Mechanism
Structure of Amines
Diazonium Group Substitution: –OH and –H
Nomenclature of Secondary and Tertiary Amines
Nomenclature of Primary Amines

