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Updated: Jun 1, 2026

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Preparation and In Vivo Use of an Activity-based Probe for N-acylethanolamine Acid Amidase
Published on: November 23, 2016
4-Ethyl-amino-3-nitro-benzoic acid.
Summary
This study details the crystal structure of a nitro-substituted benzene compound. Molecular interactions, including hydrogen bonds and nitro group twisting, dictate its crystal packing and dimeric formation.
Area of Science:
- Crystallography
- Organic Chemistry
- Molecular Structure
Background:
- Understanding molecular interactions is crucial for predicting material properties.
- Crystal structure analysis reveals the three-dimensional arrangement of atoms and molecules.
- Hydrogen bonding plays a significant role in molecular self-assembly and crystal packing.
Purpose of the Study:
- To elucidate the crystal structure of the compound C(9)H(10)N(2)O(4).
- To investigate the role of intramolecular and intermolecular interactions in its crystal packing.
- To analyze the conformation of the nitro group relative to the benzene ring.
Main Methods:
- Single-crystal X-ray diffraction was employed to determine the molecular and crystal structure.
- Analysis of hydrogen bonding networks (N-H⋯O and O-H⋯O) was performed.
- Dihedral angles were measured to quantify the nitro group's orientation.
Main Results:
- An intramolecular N-H⋯O hydrogen bond forms a six-membered (S(6)) ring motif.
- The nitro group exhibits a slight twist from the benzene ring (dihedral angle of 15.29°).
- Molecules stack along the a-axis facilitated by short O⋯O contacts (2.6481 Å) between nitro groups, forming centrosymmetric dimers via intermolecular O-H⋯O hydrogen bonds.
Conclusions:
- The crystal structure is characterized by a combination of intramolecular hydrogen bonding and intermolecular interactions.
- Nitro group conformation and intermolecular contacts significantly influence the overall crystal packing.
- The formation of centrosymmetric dimers is a key feature of the observed crystal architecture.
Related Concept Videos
Electrophilic Aromatic Substitution: Nitration of Benzene
The nitration of benzene is an example of an electrophilic aromatic substitution reaction. It involves the formation of a very powerful electrophile, the nitronium ion, which is linear in shape. The reaction occurs through the interaction of two strong acids, sulfuric and nitric acid.
2° Amines to N-Nitrosamines: Reaction with NaNO2
Secondary amines react with nitrous acid to form N-nitrosamines, as depicted in Figure 1. Nitrous acid, a weak and unstable acid, is formed in situ from an aqueous solution of sodium nitrite and strong acids, such as hydrochloric acid or sulfuric acid, in cold conditions. In the presence of an acid, the nitrous acid gets protonated. The subsequent loss of water results in the formation of the electrophile known as nitrosonium ion.
Physical Properties of Amines
Amines with low molecular weight are usually gaseous at room temperature, while those with high molecular weight are liquid or solids in nature. Usually, low molecular weight amines have a rotten fish-like smell. Diamines typically have a pungent smell. For instance, cadaverine and putrescine, depicted in Figure 1, are two molecules responsible for decaying tissue.
1° Amines to Diazonium or Aryldiazonium Salts: Diazotization with NaNO2 Overview
Nitrous acid and nitric acids are two types of acids containing nitrogen, among which nitrous acid is weaker than nitric acid. Nitrous acid with a pKa value of 3.37 ionizes in water to give a nitrite ion and the hydronium ion.
The nitrous acid is unstable. Hence, it is formed in situ from a solution of sodium nitrite and cold aqueous acids such as hydrochloric or sulfuric acid. In an acidic solution, the –OH group of nitrous acid undergoes protonation to give oxonium ion, followed by water loss...
The nitrous acid is unstable. Hence, it is formed in situ from a solution of sodium nitrite and cold aqueous acids such as hydrochloric or sulfuric acid. In an acidic solution, the –OH group of nitrous acid undergoes protonation to give oxonium ion, followed by water loss...

