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Synthesis of pH Dependent Pyrazole, Imidazole, and Isoindolone Dipyrrinone Fluorophores using a Claisen-Schmidt Condensation Approach
Published on: June 10, 2021
3,4-Diaminopyridinium 2-carboxy-4,6-dinitrophenolate.
Madhukar Hemamalini1, Hoong-Kun Fun
1X-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia.
This study details the crystal structure of a 3,4-diaminopyridine salt with 3,5-dinitrosalicylate. The analysis reveals protonation of the pyridine nitrogen and disordered anion orientations, forming a 3D network via hydrogen bonds.
Area of Science:
- Crystallography
- Supramolecular Chemistry
- Organic Chemistry
Background:
- 3,4-diaminopyridine is a versatile organic compound with applications in coordination chemistry and materials science.
- Salicylic acid derivatives, particularly dinitrosalicylic acid, are used in analytical chemistry and as precursors for energetic materials.
- Understanding the solid-state structures of organic salts is crucial for predicting their physical and chemical properties.
Purpose of the Study:
- To elucidate the crystal structure of the 3,4-diaminopyridine 3,5-dinitrosalicylate salt.
- To investigate the hydrogen bonding interactions and molecular arrangement in the solid state.
- To characterize the disorder within the anion component of the salt.
Main Methods:
- Single-crystal X-ray diffraction was employed to determine the molecular and crystal structure.
- The crystal structure was solved and refined using standard crystallographic software.
- Intermolecular interactions, including hydrogen bonds, were analyzed using crystallographic data.
Main Results:
- The salt crystallizes with the formula [C(5)H(8)N(3)](+)[C(7)H(3)N(2)O(7)](-), indicating protonation of the pyridine nitrogen in 3,4-diaminopyridine.
- The 3,5-dinitrosalicylate anion exhibits significant whole-molecule disorder, adopting two distinct orientations with a refined occupancy ratio.
- A three-dimensional network is formed through extensive intermolecular hydrogen bonding, including N-H···O and C-H···O interactions between cations and anions.
Conclusions:
- The crystal structure provides detailed insights into the protonation state and intermolecular interactions of this organic salt.
- The observed anion disorder has implications for the material's properties and packing efficiency.
- The formation of a robust 3D hydrogen-bonded network highlights the importance of non-covalent interactions in directing crystal assembly.
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