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Diversity of plasmids encoding histidine decarboxylase gene in Tetragenococcus spp. isolated from Japanese fish sauce
Masataka Satomi1, Manabu Furushita, Hiroshi Oikawa
1National Research Institute of Fisheries Science, Fisheries Research Agency, Fukuura, Kanazawa-ku, Yokohama, Japan. msatomi@affrc.go.jp
Abstract:
Nineteen isolates of histamine producing halophilic bacteria were isolated from four fish sauce mashes, each mash accumulating over 1000 ppm of histamine. The complete sequences of the plasmids encoding the pyruvoyl dependent histidine decarboxylase gene (hdcA), which is harbored in histamine producing bacteria, were determined. In conjunction, the sequence regions adjacent to hdcA were analyzed to provide information regarding its genetic origin. As reference strains, Tetragenococcus halophilus H and T. muriaticus JCM10006(T) were also studied. Phenotypic and 16S rRNA gene sequence analyses identified all isolates as T. halophilus, a predominant histamine producing bacteria present during fish sauce fermentation. Genetic analyses (PCR, Southern blot, and complete plasmid sequencing) of the histamine producing isolates confirmed that all the isolates harbored approximately 21-37 kbp plasmids encoding a single copy of the hdc cluster consisting of four genes related to histamine production. Analysis of hdc clusters, including spacer regions, indicated >99% sequence similarity among the isolates. All of the plasmids sequenced encoded traA, however genes related to plasmid conjugation, namely mob genes and oriT, were not identified. Two putative mobile genetic elements, ISLP1-like and IS200-like, respectively, were identified in the up- and downstream region of the hdc cluster of all plasmids. Most of the sequences, except hdc cluster and two adjacent IS elements, were diverse among plasmids, suggesting that each histamine producers harbored a different histamine-related plasmid. These results suggested that the hdc cluster was not spread by clonal dissemination depending on the specific plasmid and that the hdc cluster in tetragenococcal plasmid was likely encoded on transformable elements.
Insights
Histamine-producing bacteria in fish sauce carry plasmids with the histidine decarboxylase gene (hdcA). These plasmids, likely transferred via mobile elements rather than conjugation, contain diverse sequences, suggesting independent acquisition of the hdc cluster.
Area of Science:
- Food Microbiology
- Bacterial Genetics
- Molecular Biology
Background:
- Histamine accumulation in fish sauce poses a food safety risk.
- Halophilic bacteria, particularly Tetragenococcus halophilus, are key histamine producers during fermentation.
- Understanding the genetic basis of histamine production is crucial for controlling its levels.
Purpose of the Study:
- To characterize the plasmids encoding the histidine decarboxylase gene (hdcA) in histamine-producing halophilic bacteria.
- To investigate the genetic origin and dissemination mechanisms of the hdc cluster.
- To analyze the genetic diversity of histamine-related plasmids in fish sauce isolates.
Main Methods:
- Isolation and identification of histamine-producing bacteria from fish sauce mashes.
- Phenotypic analysis and 16S rRNA gene sequencing for bacterial identification.
- Polymerase Chain Reaction (PCR), Southern blotting, and complete plasmid sequencing.
- Analysis of gene sequences, including adjacent regions and mobile genetic elements.
Main Results:
- Nineteen histamine-producing halophilic bacterial isolates were identified as Tetragenococcus halophilus.
- All isolates harbored 21-37 kbp plasmids containing the hdc cluster (four genes) responsible for histamine production.
- The hdc clusters showed >99% sequence similarity, while other plasmid regions were diverse.
- ISLP1-like and IS200-like mobile elements were found flanking the hdc cluster, suggesting a role in its transfer.
Conclusions:
- The hdc cluster in Tetragenococcus plasmids is likely acquired via transformable elements, not clonal spread or plasmid conjugation.
- The diversity of plasmid backbones suggests independent acquisition of the hdc cluster by different bacterial strains.
- Mobile genetic elements play a significant role in the dissemination of histamine production genes in fish sauce bacteria.
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