Affinity detection of low molecular weight analytes

In this paper we report attempts to detect directly the binding of a low molecular weight substance to a protein binding site. An optical transducer based on reflectometric interference spectroscopy (RIFS) was used to detect the binding of biotin (244 g/mol) to a thin silica film surface coated with streptavidin. RIFS allows measurement of changes in the optical thickness of thin transparent films with high resolution. During immobilization of streptavidin, an increase in layer thickness of about 5 nm was detected. Subsequent incubation with biotin (4 μM) resulted in a thickness increase of about 70 pm. Repeated incubation with biotin gave no further increase in layer thickness. The lowest biotin concentration showing significant effects was 40 nM. Incubation with benzoic acid (40 μM) gave no thickness change. The setup allowed significant detection of thickness increases of 2 pm and above. Therefore, the thickness effects observed in the study could be unambiguously and clearly identified.