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An In Vitro Protocol for Evaluating MicroRNA Levels, Functions, and Associated Target Genes in Tumor Cells
Published on: May 21, 2019
Differential microRNA expression and identification of putative miRNA targets and pathways in head and neck cancers
Alpha Mu Nurul-Syakima1, C Yoke-Kqueen, A R Sabariah
1Department of Biomedical Science, Faculty of Medicine and Health Sciences, University Putra Malaysia, 43400 UPM Serdang, Selangor Darul Ehsan, Malaysia.
Abstract:
MicroRNAs (miRNAs) are small noncoding RNAs that involved in various cancer-related cellular processes. Diverse studies on expression profiling of miRNAs have been performed and the data showed that some miRNAs are up-regulated or down-regulated in cancer. Until now, there are no data published on the miRNA expression in head and neck cancers from Malaysia. Hence, this study aimed to investigate potentially crucial miRNAs in head and neck cancer patients from Malaysian populations. A global miRNA profiling was performed on 12 samples of head and neck cancer tissue using microarray analysis followed by validation using real-time RT-PCR. Microarray analysis identified 10 miRNAs that could distinguish malignant head and neck cancer lesions from normal tissues; 7 miRNAs (hsa-miR-181a-2*, hsa-miR-29b-1*, hsa-miR-181a, hsa-miR-181b, hsa-miR-744, hsa-miR-1271 and hsa-miR-221*) were up-regulated while 3 miRNAs (hsa-miR-141, hsa-miR-95 and hsa-miR-101) were down-regulated. These miRNAs may contribute in a simple profiling strategy to identify individuals at higher risk of developing head and neck cancers, thus helping in the elucidation of the molecular mechanisms involved in head and neck cancer pathogenesis.
Insights
This study identified 10 microRNAs (miRNAs) dysregulated in Malaysian head and neck cancer patients. These findings offer potential biomarkers for early cancer detection and understanding disease mechanisms.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- MicroRNAs (miRNAs) are small noncoding RNAs regulating cellular processes, with altered expression observed in various cancers.
- Previous miRNA expression profiling studies have not included head and neck cancer patients from Malaysia.
Purpose of the Study:
- To investigate crucial microRNA expression profiles in head and neck cancer patients from Malaysian populations.
- To identify potential diagnostic biomarkers for head and neck cancers.
Main Methods:
- Global miRNA profiling of 12 head and neck cancer tissue samples using microarray analysis.
- Validation of differentially expressed miRNAs using real-time RT-PCR.
Main Results:
- Microarray analysis identified 10 miRNAs distinguishing malignant from normal head and neck tissues.
- Seven miRNAs (hsa-miR-181a-2*, hsa-miR-29b-1*, hsa-miR-181a, hsa-miR-181b, hsa-miR-744, hsa-miR-1271, hsa-miR-221*) were significantly up-regulated.
- Three miRNAs (hsa-miR-141, hsa-miR-95, hsa-miR-101) were significantly down-regulated.
Conclusions:
- The identified miRNAs may serve as potential biomarkers for head and neck cancer risk stratification.
- These findings contribute to understanding the molecular pathogenesis of head and neck cancers.
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