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Updated: Jun 1, 2026

Using In Vitro Fluorescence Resonance Energy Transfer to Study the Dynamics Of Protein Complexes at a Millisecond Time Scale
Published on: March 14, 2019
Skp1 stabilizes the conformation of F-box proteins
Yukiko Yoshida1, Arisa Murakami, Keiji Tanaka
1Laboratory of Protein Metabolism, Tokyo Metropolitan Institute of Medical Science, 2-1-6 Kamikitazawa, Setagaya-ku, Tokyo 156-8506, Japan. yoshida-yk@igakuken.or.jp
Abstract:
The SCF ubiquitin ligase complex consists of four components, Skp1, Cul1, ROC1/Rbx1, and a variable subunit F-box protein, which serves as a receptor for target proteins. The F-box proteins consist of an N-terminal ∼40 amino acid F-box domain that binds to Skp1 and the C-terminal substrate-binding domain. We have reported previously that Fbs1 and Fbs2 are N-linked glycoprotein-specific F-box proteins. In addition, other three F-box proteins, Fbg3, Fbg4, and Fbg5, show high homology to Fbs1 and Fbs2, but their functions remain largely unknown. Here we report that Skp1 assists in correct folding of exogenously expressed F-box proteins. Fbs2 as well as Fbg3, Fbg4, and Fbg5 proteins formed SCF complexes but did not bind to N-glycoproteins when exogenously expressed alone. However, co-expression of Fbs2 and Fbg5 with Skp1 facilitated their binding to glycoproteins that reacted with ConA. Furthermore, Skp1 increased the cellular concentrations of F-box proteins by preventing aggregate formation. These observations suggest that Skp1 plays an important role in stabilizing the conformation of these F-box proteins, which increases their expression levels and substrate-binding.
Insights
Skp1 protein aids in the proper folding and stabilization of F-box proteins, enhancing their expression and glycoprotein binding capabilities within the SCF complex.
Area of Science:
- Cellular Biology
- Protein Biochemistry
- Ubiquitin-Proteasome System
Background:
- The SCF (Skp1-Cul1-Rbx1) ubiquitin ligase complex requires F-box proteins for substrate recognition.
- F-box proteins contain an F-box domain for Skp1 binding and a substrate-binding domain.
- The functions of F-box proteins Fbg3, Fbg4, and Fbg5, homologous to known glycoprotein binders Fbs1/Fbs2, are largely uncharacterized.
Purpose of the Study:
- To investigate the role of Skp1 in the function and expression of F-box proteins, particularly Fbg3, Fbg4, Fbg5, and Fbs2.
- To determine if Skp1 influences the ability of these F-box proteins to bind N-glycoproteins.
Main Methods:
- Expression of F-box proteins (Fbs2, Fbg3, Fbg4, Fbg5) alone and in combination with Skp1 in cellular systems.
- Assessment of SCF complex formation.
- Analysis of N-glycoprotein binding using Concanavalin A (ConA) reactivity.
- Evaluation of F-box protein cellular concentrations and aggregate formation.
Main Results:
- Exogenously expressed Fbs2, Fbg3, Fbg4, and Fbg5 proteins formed SCF complexes but did not bind N-glycoproteins independently.
- Co-expression with Skp1 enabled Fbs2 and Fbg5 to bind ConA-reactive glycoproteins.
- Skp1 increased cellular concentrations of F-box proteins by preventing aggregation.
- Skp1 stabilized F-box protein conformation, improving expression and substrate binding.
Conclusions:
- Skp1 is crucial for the correct folding and conformational stability of specific F-box proteins.
- Skp1 enhances the expression levels and substrate-binding capacity of F-box proteins within the SCF complex.
- These findings elucidate a key regulatory role for Skp1 in F-box protein function and SCF ligase activity.
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