Related Experiment Video
Updated: Feb 5, 2026

08:47
Author Spotlight: Advancements in Correlative Light and Electron Microscopy with Fluorescent Protein Preservation
Published on: January 12, 2024
2.4K
Near-infrared branding efficiently correlates light and electron microscopy
Derron Bishop1, Ivana Nikić, Mary Brinkoetter
1Department of Physiology, Indiana University School of Medicine-Muncie, Muncie, Indiana, USA.
Nature Methods
|June 7, 2011
Summary
Near-infrared branding (NIRB) creates 3D fluorescent marks in tissues. These marks allow researchers to correlate light and electron microscopy images, even for tiny structures like dendritic spines.
Area of Science:
- Neuroscience
- Microscopy
- Biotechnology
Background:
- Correlating light and electron microscopy is crucial for understanding complex tissue structures.
- Existing methods for correlating these microscopy techniques are often challenging and limited.
Purpose of the Study:
- To develop a novel method for correlating light and electron microscopy in fixed tissues.
- To enable precise re-identification of microscopic structures across different imaging modalities.
Main Methods:
- Developed near-infrared branding (NIRB) using a pulsed, near-infrared laser.
- Created three-dimensional fiducial marks within fixed tissue samples.
- Utilized the fluorescent properties of the marks for initial imaging and photo-oxidation for electron contrast.
Main Results:
- NIRB successfully generated defined fiducial marks in 3D.
- These marks were fluorescent and could be converted to electron-dense contrast.
- Enabled re-identification of structures as small as dendritic spines between light and electron microscopy.
Conclusions:
- Near-infrared branding (NIRB) is an effective technique for correlating light and electron microscopy.
- This method overcomes a major challenge in high-resolution biological imaging.
- NIRB facilitates detailed structural analysis of complex tissues at multiple scales.
Related Concept Videos
Overview of Electron Microscopy
14.7K
The wavelengths of visible light ultimately limit the maximum theoretical resolution of images created by light microscopes. Most light microscopes can only magnify 1000X, and a few can magnify up to 1500X. Electrons, like electromagnetic radiation, can behave like waves, but with wavelengths of 0.005 nm, they produce significantly greater resolution up to 0.05 nm as compared to 500 nm for visible light. An electron microscope (EM) can create a sharp image that is magnified up to 2,000,000X.
14.7K
Scanning Electron Microscopy
5.5K
A scanning electron microscope (SEM) is used to study the surface features of a sample by using an electron beam that scans the sample surface in a two-dimensional manner. Typically, areas between ~1 centimeter to 5 micrometers in width can be imaged. SEM can be used to image bacteria, viruses, tissues as well as larger samples like insects. Conventional SEM gives a magnification ranging from 20X to 30,000X and spatial resolution of 50 to 100 nanometers.
Fundamental Principles
Accelerated...
Fundamental Principles
Accelerated...
5.5K
Transmission Electron Microscopy
7.3K
In 1931, physicist Ernst Ruska—building on the idea that magnetic fields can direct an electron beam just as lenses can direct a beam of light in an optical microscope—developed the first prototype of the electron microscope. This development led to the development of the field of electron microscopy. In the transmission electron microscope (TEM), electrons are produced by a hot tungsten element and accelerated by a potential difference in an electron gun, which gives them up to 400...
7.3K
Immunogold Electron Microscopy
5.5K
Immunoelectron microscopy utilizes immunogold labeling of endogenous proteins with specific antibodies to detect and localize these proteins in cells and tissues. The procedure provides insights into the distribution and quantification of protein under different stimulation conditions offering clues about their functions. Conjugating highly electron-dense gold particles with primary or secondary antibodies allow antigen detection on and within cells, with high resolution and specificity.
5.5K
Cryo-electron Microscopy
4.3K
Conventional electron microscopy (EM) involves dehydration, fixation, and staining of biological samples, which distorts the native state of biological molecules and results in several artifacts. Also, the high-energy electron beam damages the sample and makes it difficult to obtain high-resolution images. These issues can be addressed using cryo-EM, which uses frozen samples and gentler electron beams. The technique was developed by Jacques Dubochet, Joachim Frank, and Richard Henderson, for...
4.3K
Correlations
36.1K
Correlation means that there is a relationship between two or more variables (such as ice cream consumption and crime), but this relationship does not necessarily imply cause and effect. When two variables are correlated, it simply means that as one variable changes, so does the other. We can measure correlation by calculating a statistic known as a correlation coefficient. A correlation coefficient is a number from -1 to +1 that indicates the strength and direction of the relationship between...
36.1K

