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Updated: Jun 1, 2026

Mapping the Structure-Function Relationships of Disordered Oncogenic Transcription Factors Using Transcriptomic Analysis
Published on: June 27, 2020
A novel oncogenic mechanism in Ewing sarcoma involving IGF pathway targeting by EWS/Fli1-regulated microRNAs
E L McKinsey1, J K Parrish, A E Irwin
1Department of Pathology, University of Colorado, Anschutz Medical Campus, Aurora, CO 80045, USA.
Abstract:
MicroRNAs (miRs) are a novel class of cellular bioactive molecules with critical functions in the regulation of gene expression in normal biology and disease. MiRs are frequently misexpressed in cancer, with potent biological consequences. However, relatively little is known about miRs in pediatric cancers, including sarcomas. Moreover, the mechanisms behind aberrant miR expression in cancer are poorly understood. Ewing sarcoma is an aggressive pediatric malignancy driven by EWS/Ets fusion oncoproteins, which are gain-of-function transcriptional regulators. We employed stable silencing of EWS/Fli1, the most common of the oncogenic fusions, and global miR profiling to identify EWS/Fli1-regulated miRs with oncogenesis-modifying roles in Ewing sarcoma. In this report, we characterize a group of miRs (100, 125b, 22, 221/222, 27a and 29a) strongly repressed by EWS/Fli1. Strikingly, all of these miRs have predicted targets in the insulin-like growth factor (IGF) signaling pathway, a pivotal driver of Ewing sarcoma oncogenesis. We demonstrate that miRs in this group negatively regulate the expression of multiple pro-oncogenic components of the IGF pathway, namely IGF-1, IGF-1 receptor, mammalian/mechanistic target of rapamycin and ribosomal protein S6 kinase A1. Consistent with tumor-suppressive functions, these miRs manifest growth inhibitory properties in Ewing sarcoma cells. Our studies thus uncover a novel oncogenic mechanism in Ewing sarcoma, involving post-transcriptional derepression of IGF signaling by the EWS/Fli1 fusion oncoprotein via miRs. This novel pathway may be amenable to innovative therapeutic targeting in Ewing sarcoma and other malignancies with activated IGF signaling.
Insights
Ewing sarcoma oncogenesis involves the EWS/Fli1 oncoprotein repressing tumor-suppressive microRNAs (miRs). These miRs normally inhibit the insulin-like growth factor (IGF) pathway, revealing a new therapeutic target for pediatric sarcoma.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- MicroRNAs (miRs) are crucial gene regulators implicated in various diseases, including cancer.
- Aberrant microRNA expression is common in cancers, but poorly understood in pediatric malignancies like Ewing sarcoma.
- Ewing sarcoma is driven by EWS/Ets fusion proteins that act as transcriptional regulators.
Purpose of the Study:
- To identify microRNAs regulated by the EWS/Fli1 oncoprotein in Ewing sarcoma.
- To investigate the role of these microRNAs in oncogenesis and their connection to the insulin-like growth factor (IGF) signaling pathway.
- To explore potential therapeutic strategies targeting this newly identified pathway.
Main Methods:
- Stable silencing of the EWS/Fli1 fusion oncoprotein.
- Global microRNA profiling to identify differentially expressed miRs.
- Bioinformatic prediction of microRNA targets within the IGF signaling pathway.
- Functional assays to assess microRNA effects on Ewing sarcoma cell growth and IGF pathway components.
Main Results:
- EWS/Fli1 strongly represses a set of microRNAs (miR-100, miR-125b, miR-22, miR-221/222, miR-27a, miR-29a).
- These repressed microRNAs target multiple pro-oncogenic components of the IGF pathway, including IGF-1, IGF-1 receptor, mTOR, and S6K1.
- The identified microRNAs exhibit tumor-suppressive functions by inhibiting Ewing sarcoma cell growth.
Conclusions:
- The EWS/Fli1 oncoprotein drives Ewing sarcoma by repressing tumor-suppressive microRNAs, leading to derepression of the IGF signaling pathway.
- This novel mechanism highlights a critical role for microRNAs in Ewing sarcoma pathogenesis.
- Targeting this microRNA-mediated regulation of IGF signaling presents a potential therapeutic avenue for Ewing sarcoma and other cancers with activated IGF pathways.
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