SNPs in DNA repair genes associated to meningitis and host immune response

Thayse Azevedo da Silva1, Fabrícia Lima Fontes, Leonam Gomes Coutinho

  • 1Departamento de Biologia Celular e Genética, Universidade Federal do Rio Grande do Norte (UFRN), Av. Salgado Filho s/n, 59072-970 Natal, RN, Brazil.

Mutation Research
|June 10, 2011
PubMed

Insights

Genetic variations in DNA repair genes like APE1, OGG1, and PARP-1 are linked to meningitis. Specific single nucleotide polymorphisms (SNPs) were associated with increased disease risk and altered immune responses in patients.

Area of Science:

  • Genetics
  • Immunology
  • Neuroscience

Background:

  • DNA repair enzymes AP endonuclease 1 (APE1), OGG1, and PARP-1 are implicated in inflammatory responses.
  • Single nucleotide polymorphisms (SNPs) in these genes may influence susceptibility to inflammatory diseases like meningitis.

Purpose of the Study:

  • To investigate the association between APE1 Asn148Glu, OGG1 Ser326Cys, and PARP-1 Val762Ala SNPs and meningitis.
  • To evaluate the impact of these SNPs on DNA damage, immune markers, and cytokine profiles in meningitis patients.

Main Methods:

  • Genotyping of APE1, OGG1, and PARP-1 SNPs using PIRA-PCR or PCR-RFLP.
  • Assessment of genomic DNA damage using Fpg treatment.
  • Measurement of IgG, IgA, cytokines, and chemokines via Bio-Plex assays.

Main Results:

  • Increased frequency of APE1 Glu allele and OGG1 Cys/Cys genotype observed in bacterial meningitis (BM) and aseptic meningitis (AM) patients.
  • Combined SNPs showed higher occurrence in BM patients, suggesting disease association.
  • SNPs affected DNA repair activity and altered IgG production.
  • APE1 Glu allele correlated with reduced levels of IL-6, IL-1Ra, MCP-1/CCL2, and IL-8/CXCL8 in BM patients.

Conclusions:

  • The studied SNPs in APE1, OGG1, and PARP-1 are potentially associated with meningitis.
  • These genetic variations may influence DNA repair mechanisms and immune system regulation in meningitis.

Related Concept Videos

Single Nucleotide Polymorphisms-SNPs01:05

Single Nucleotide Polymorphisms-SNPs

A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...
Mismatch Repair01:20

Mismatch Repair

Organisms are capable of detecting and fixing nucleotide mismatches that occur during DNA replication. This sophisticated process requires identifying the new strand and replacing the erroneous bases with correct nucleotides. Mismatch repair is coordinated by many proteins in both prokaryotes and eukaryotes.
The Mutator Protein Family Plays a Key Role in DNA Mismatch Repair
The human genome has more than 3 billion base pairs of DNA per cell. Prior to cell division, that vast amount of genetic...
Mismatch Repair01:36

Mismatch Repair

Overview
Nucleotide Excision Repair01:38

Nucleotide Excision Repair

DNA Distortion and Damage
Cells are regularly exposed to mutagens—factors in the environment that can damage DNA and generate mutations. UV radiation is one of the most common mutagens and is estimated to introduce a significant number of changes in DNA. These include bends or kinks in the structure, which can block DNA replication or transcription. If these errors are not fixed, the damage can cause mutations, which in turn can result in cancer or disease depending on which sequences are...
Nucleotide Excision Repair01:08

Nucleotide Excision Repair

Overview
Genome-wide Association Studies-GWAS01:11

Genome-wide Association Studies-GWAS

Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
GWAS does not require the identification of the target gene involved in...