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Genetic Studies of Human DNA Repair Proteins Using Yeast as a Model System
Published on: March 18, 2010
SNPs in DNA repair genes associated to meningitis and host immune response
Thayse Azevedo da Silva1, Fabrícia Lima Fontes, Leonam Gomes Coutinho
1Departamento de Biologia Celular e Genética, Universidade Federal do Rio Grande do Norte (UFRN), Av. Salgado Filho s/n, 59072-970 Natal, RN, Brazil.
Abstract:
In vitro and in animal models, APE1, OGG1, and PARP-1 have been proposed as being involved with inflammatory response. In this work, we have investigated if the SNPs APE1 Asn148Glu, OGG1 Ser326Cys, and PARP-1 Val762Ala are associated to meningitis. The patient genotypes were investigated by PIRA-PCR or PCR-RFLP. DNA damages were detected in genomic DNA by Fpg treatment. IgG and IgA were measured from plasma and the cytokines and chemokines were measured from cerebrospinal fluid samples using Bio-Plex assays. A higher frequency (P<0.05) of APE1 Glu allele in bacterial meningitis (BM) and aseptic meningitis (AM) patients was observed. The genotypes Asn/Asn in control group and Asn/Glu in BM group was also higher. For the SNP OGG1 Ser326Cys, the genotype Cys/Cys was more frequent (P<0.05) in BM group. The frequency of PARP-1 Val/Val genotype was higher in control group (P<0.05). The occurrence of combined SNPs is significantly higher in BM patients, indicating that these SNPs may be associated to the disease. Increasing in sensitive sites to Fpg was observed in carriers of APE1 Glu allele or OGG1 Cys allele, suggesting that SNPs affect DNA repair activity. Alterations in IgG production were observed in the presence of SNPs APE1 Asn148Glu, OGG1 Ser326Cys or PARP-1 Val762Ala. Moreover, reduction in the levels of IL-6, IL-1Ra, MCP-1/CCL2 and IL-8/CXCL8 was observed in the presence of APE1 Glu allele in BM patients. In conclusion, we obtained indications of an effect of SNPs in DNA repair genes on the regulation of immune response in meningitis.
Insights
Genetic variations in DNA repair genes like APE1, OGG1, and PARP-1 are linked to meningitis. Specific single nucleotide polymorphisms (SNPs) were associated with increased disease risk and altered immune responses in patients.
Area of Science:
- Genetics
- Immunology
- Neuroscience
Background:
- DNA repair enzymes AP endonuclease 1 (APE1), OGG1, and PARP-1 are implicated in inflammatory responses.
- Single nucleotide polymorphisms (SNPs) in these genes may influence susceptibility to inflammatory diseases like meningitis.
Purpose of the Study:
- To investigate the association between APE1 Asn148Glu, OGG1 Ser326Cys, and PARP-1 Val762Ala SNPs and meningitis.
- To evaluate the impact of these SNPs on DNA damage, immune markers, and cytokine profiles in meningitis patients.
Main Methods:
- Genotyping of APE1, OGG1, and PARP-1 SNPs using PIRA-PCR or PCR-RFLP.
- Assessment of genomic DNA damage using Fpg treatment.
- Measurement of IgG, IgA, cytokines, and chemokines via Bio-Plex assays.
Main Results:
- Increased frequency of APE1 Glu allele and OGG1 Cys/Cys genotype observed in bacterial meningitis (BM) and aseptic meningitis (AM) patients.
- Combined SNPs showed higher occurrence in BM patients, suggesting disease association.
- SNPs affected DNA repair activity and altered IgG production.
- APE1 Glu allele correlated with reduced levels of IL-6, IL-1Ra, MCP-1/CCL2, and IL-8/CXCL8 in BM patients.
Conclusions:
- The studied SNPs in APE1, OGG1, and PARP-1 are potentially associated with meningitis.
- These genetic variations may influence DNA repair mechanisms and immune system regulation in meningitis.
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