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Updated: Jun 1, 2026

Site-specific Bacterial Chromosome Engineering: ΦC31 Integrase Mediated Cassette Exchange (IMCE)
Published on: March 16, 2012
Self-transmissibility of the integrative and conjugative element ICEPm1 between clinical isolates requires a
Erika L Flannery1, Samantha M Antczak, Harry L T Mobley
1Department of Microbiology and Immunology, University of Michigan Medical School, 5641 Medical Science Building II, 1150 West Medical Center Drive, Ann Arbor, MI 48109, USA.
Abstract:
Integrative and conjugative elements (ICEs), which are chromosomal mobile elements, can conjugatively transfer between bacteria. Recently, we identified a genomic island of Proteus mirabilis, a common agent of catheter-associated urinary tract infection (UTI), that possesses all the properties consistent with an ICE. This element, designated ICEPm1, is highly conserved in other causative agents of UTI, suggesting its mobility. We demonstrate that ICEPm1 can actively excise from the chromosome in a clonal population of bacteria and that this excision is integrase dependent. Although in P. mirabilis HI4320, ICEPm1 is annotated as integrated into the phenylalanine tRNA gene pheV, we show that ICEPm1 can integrate into either pheV or pheU. We determined that ICEPm1 transfers at a frequency of 1.35 × 10(-5) transconjugants/donor to ICEPm1-deficient P. mirabilis using plate mating assays with clinical isolates. Insertional inactivation of a putative integrase gene on ICEPm1 decreased transfer frequencies of ICEPm1 to below the limit of detection. Mutation of the relaxase of ICEPm1 also eliminates transfer and demonstrates that this element is indeed self-transmissible and not transferred in trans, as are some mobilizable genomic islands. Together, these findings clearly demonstrate that ICEPm1 can actively excise from the chromosome in an integrase-dependent manner, dynamically integrate into both phenylalanine tRNA genes, and transfer into clinical strains using its own conjugation machinery.
Insights
Integrative and conjugative elements (ICEs) like ICEPm1 can move between bacteria. This study shows ICEPm1, found in UTI-causing Proteus mirabilis, can excise, move, and integrate into new bacterial genes.
Area of Science:
- Microbiology
- Genetics
- Bacterial Pathogenesis
Background:
- Integrative and conjugative elements (ICEs) are mobile genetic elements found on bacterial chromosomes.
- Proteus mirabilis is a significant cause of catheter-associated urinary tract infections (UTIs).
- Genomic islands with ICE properties are increasingly recognized for their role in bacterial adaptation and spread.
Purpose of the Study:
- To characterize a novel integrative and conjugative element (ICEPm1) identified in Proteus mirabilis.
- To investigate the mobility, integration, and transfer mechanisms of ICEPm1.
- To assess the prevalence and significance of ICEPm1 in clinical UTI isolates.
Main Methods:
- Identification and annotation of ICEPm1 in Proteus mirabilis.
- Analysis of ICEPm1 excision and integration using molecular techniques.
- Plate mating assays to quantify ICEPm1 transfer frequency between bacterial strains.
- Mutational analysis of key genes (integrase, relaxase) to determine their role in ICEPm1 mobility.
Main Results:
- ICEpM1 actively and integrase-dependently excises from the P. mirabilis chromosome.
- ICEpM1 integrates into either the pheV or pheU phenylalanine tRNA genes.
- Transfer frequency of ICEPm1 was determined to be 1.35 × 10⁻⁵ transconjugants/donor.
- Disruption of integrase or relaxase genes significantly impaired or abolished ICEPm1 transfer, confirming self-transmissibility.
Conclusions:
- ICEpM1 is a self-transmissible integrative and conjugative element in Proteus mirabilis.
- ICEpM1 possesses a functional conjugation machinery enabling its transfer between bacteria.
- The mobility and integration flexibility of ICEPm1 may contribute to the dissemination of virulence factors in UTI pathogens.
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