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Recombinant Protein Expression, Crystallization, and Biophysical Studies of a Bacillus-conserved Nucleotide Pyrophosphorylase, BcMazG
Published on: May 16, 2017
Crystal structure of Bacillus anthracis phosphoglucosamine mutase, an enzyme in the peptidoglycan biosynthetic
Ritcha Mehra-Chaudhary1, Jacob Mick, Lesa J Beamer
1Biochemistry Department, University of Missouri, Columbia, MO 65211, USA.
Abstract:
Phosphoglucosamine mutase (PNGM) is an evolutionarily conserved bacterial enzyme that participates in the cytoplasmic steps of peptidoglycan biosynthesis. As peptidoglycan is essential for bacterial survival and is absent in humans, enzymes in this pathway have been the focus of intensive inhibitor design efforts. Many aspects of the structural biology of the peptidoglycan pathway have been elucidated, with the exception of the PNGM structure. We present here the crystal structure of PNGM from the human pathogen and bioterrorism agent Bacillus anthracis. The structure reveals key residues in the large active site cleft of the enzyme which likely have roles in catalysis and specificity. A large conformational change of the C-terminal domain of PNGM is observed when comparing two independent molecules in the crystal, shedding light on both the apo- and ligand-bound conformers of the enzyme. Crystal packing analyses and dynamic light scattering studies suggest that the enzyme is a dimer in solution. Multiple sequence alignments show that residues in the dimer interface are conserved, suggesting that many PNGM enzymes adopt this oligomeric state. This work lays the foundation for the development of inhibitors for PNGM enzymes from human pathogens.
Insights
Structural insights into phosphoglucosamine mutase (PNGM) from Bacillus anthracis reveal key catalytic residues and a flexible domain. This bacterial enzyme
Area of Science:
- Biochemistry
- Structural Biology
- Microbiology
Background:
- Peptidoglycan biosynthesis is crucial for bacterial survival and a target for drug development.
- Phosphoglucosamine mutase (PNGM) is essential for peptidoglycan synthesis but its structure remains elusive.
- Bacillus anthracis PNGM is a potential drug target due to its role in a pathway absent in humans.
Purpose of the Study:
- To determine the crystal structure of Bacillus anthracis phosphoglucosamine mutase (PNGM).
- To elucidate the structural basis for PNGM catalysis and substrate specificity.
- To investigate the oligomeric state and conformational flexibility of PNGM.
Main Methods:
- X-ray crystallography was employed to obtain the PNGM structure.
- Analysis of the crystal structure identified key active site residues.
- Dynamic light scattering and crystal packing analysis were used to assess PNGM's quaternary structure.
Main Results:
- The crystal structure of Bacillus anthracis PNGM was determined.
- Key residues in the active site cleft were identified, suggesting roles in catalysis and specificity.
- A significant conformational change in the C-terminal domain was observed, providing insights into apo- and ligand-bound states.
- PNGM exists as a dimer in solution, supported by crystal packing and DLS data.
Conclusions:
- The determined PNGM structure provides a foundation for understanding its mechanism.
- Conserved residues at the dimer interface suggest PNGM enzymes commonly form dimers.
- This structural information is critical for the rational design of PNGM inhibitors against bacterial pathogens.
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