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Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
Novel variant Pro143Ala in HTRA2 contributes to Parkinson's disease by inducing hyperphosphorylation of HTRA2 protein
Chin-Hsien Lin1, Meng-Ling Chen, Grace Shiahuy Chen
1Department of Neurology, National Taiwan University Hospital, College of Medicine, National Taiwan University, Taipei, Taiwan.
Abstract:
Mutations in the gene encoding the mitochondrial protein high temperature requirement A2 (HTRA2) are inconsistently associated with a risk of Parkinson's disease (PD). We assessed the presence of HTRA2 mutations among patients with PD and performed functional assay of identified mutations or variants. Among the total 1,373 subjects, the entire HTRA2 coding region was sequenced in 113 early-onset PD (EOPD), 20 familial PD patients and 150 control subjects. An additional 390 sporadic late-onset PD patients and 700 controls were subsequently screened to validate possible mutations found in the first set. We identified two novel heterozygous variants, c.427C > G (Pro143Ala) and c.906 +3 G > A, in 2 (1.5%) EOPD patients. The missense variant, Pro143Ala, was also observed in one late-onset PD patient but was absent in total 850 control subjects (relative risk 2.3, 95% CI 1.5-2.8, P = 0.04). Expressing Pro143Ala variant of HTRA2 in primary dopaminergic neurons causes neurite degeneration. Following exposure to rotenone, the ultra-structural mitochondrial abnormality, the percentage of mitochondrial dysfunction and apoptosis in cells carrying the HTRA2 Pro143Ala variant was significantly higher than wild-type cells. Mechanistically, protein level of phosphorylated HTRA2 was increased in cells carrying the Pro143Ala variant, suggesting Pro143Ala variant promotes HTRA2 phosphorylation with resultant mitochondrial dysfunction. Our results support a biologically relevant role of HTRA2 in PD susceptibility in Taiwanese. Further large-scale association studies are warranted to confirm the role of HTRA2 Pro143Ala variant in the risk of PD.
Insights
High temperature requirement A2 (HTRA2) gene variants are linked to Parkinson's disease (PD) risk. The Pro143Ala variant causes neurite degeneration and mitochondrial dysfunction, suggesting a role in PD susceptibility.
Area of Science:
- Neuroscience
- Genetics
- Mitochondrial Biology
Background:
- Mutations in the high temperature requirement A2 (HTRA2) gene have an unclear association with Parkinson's disease (PD) risk.
- HTRA2 encodes a mitochondrial protein crucial for cellular function.
Purpose of the Study:
- To investigate the association between HTRA2 mutations and Parkinson's disease (PD) in a Taiwanese population.
- To functionally characterize identified HTRA2 variants in cellular models.
Main Methods:
- Sequencing of the entire HTRA2 coding region in early-onset PD (EOPD), familial PD, and control subjects.
- Functional assays using primary dopaminergic neurons to assess the impact of the Pro143Ala variant on mitochondrial function and cell viability.
- Validation screening in a larger cohort of sporadic late-onset PD patients and controls.
Main Results:
- Two novel heterozygous HTRA2 variants, including c.427C>G (Pro143Ala), were identified in EOPD patients.
- The Pro143Ala variant was found in one late-onset PD patient but not in 850 controls, suggesting a potential risk association (RR 2.3, P=0.04).
- Pro143Ala expression led to neurite degeneration, increased mitochondrial dysfunction, apoptosis, and HTRA2 phosphorylation in dopaminergic neurons.
Conclusions:
- The HTRA2 Pro143Ala variant is biologically relevant and may contribute to PD susceptibility in the Taiwanese population.
- Further large-scale studies are needed to confirm the role of this variant in PD risk.
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