Related Experiment Video
Updated: May 31, 2026

12:00
A Practical Guide to Phylogenetics for Nonexperts
Published on: February 5, 2014
An hypothesis-driven, molecular phylogenetics exercise for college biology students
Joel D Parker1, Robert E Ziemba, Sara Helms Cahan
1Department of Biology, Arizona State University, Tempe, Arizona 85287. joel.parker@ie-zea.unil.ch.
Summary
This lab exercise uses DNA evidence to explore evolutionary history and model gene transcription and translation. Students analyze Drosophila DNA to understand cellular information use and evolutionary relationships.
Area of Science:
- Evolutionary Biology
- Molecular Biology
- Genetics
Background:
- Understanding evolutionary history relies on analyzing genetic material.
- Gene transcription and translation are fundamental cellular processes central to molecular biology.
Purpose of the Study:
- To develop a laboratory exercise for early college biology students.
- To teach the use of DNA evidence in investigating evolutionary history.
- To model gene transcription and translation processes.
Main Methods:
- Inquiry-based laboratory approach using DNA evidence.
- Polymerase Chain Reaction (PCR) and DNA sequencing techniques.
- Phylogenetic sequence analysis and pen-and-paper modeling of transcription/translation.
Main Results:
- Students investigate evolutionary relationships among Drosophila species using DNA data.
- Practical application of molecular biology techniques in an evolutionary context.
- Successful integration of cellular processes modeling with DNA analysis.
Conclusions:
- The laboratory effectively links DNA analysis to evolutionary history and cellular processes.
- The exercise is adaptable for different educational levels, including high school 'dry lab' versions.
- Provides students with hands-on experience in molecular techniques and evolutionary concepts.
Related Concept Videos
Evolutionary Relationships through Genome Comparisons
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
Microbial Phylogeny
Understanding the evolutionary relationships among microorganisms is fundamental to microbial ecology and taxonomy. Phylogenetic trees are essential tools for inferring these relationships, relying primarily on comparative analyses of molecular sequences such as DNA, RNA, or proteins. In microbial studies, these trees typically depict the evolutionary paths of diverse bacterial and archaeal species by mapping genetic differences accumulated over time.Phylogenetic trees are composed of tips,...
Phylogeny
Phylogeny is concerned with the evolutionary diversification of organisms or groups of organisms. A group of organisms with a name is called a taxon (singular). Taxa (plural) can span different levels of the evolutionary hierarchy. For instance, the group containing all birds is a taxon (comprising the class Aves), and the group of all species of daisies (the genus Bellis) is a taxon. Phylogenies can likewise include just one genus (i.e., depict species relationships) or span an entire kingdom.
Phylogenetic Trees
Phylogenetic trees come in many forms. It matters in which sequence the organisms are arranged from the bottom to the top of the tree, but the branches can rotate at their nodes without altering the information. The lines connecting individual nodes can be straight, angled, or even curved.
Phylogenetic Trees
Phylogenetic trees come in many forms. It matters in which sequence the organisms are arranged from the bottom to the top of the tree, but the branches can rotate at their nodes without altering the information. The lines connecting individual nodes can be straight, angled, or even curved.
Applications of Molecular Taxonomy
Molecular taxonomy has revolutionized the understanding and classification of bacteria, providing precise insights into their diversity, evolutionary relationships, and ecological roles. By utilizing molecular techniques such as DNA sequencing and fingerprinting, researchers have made significant strides in various fields related to bacterial studies.Resolving Taxonomic AmbiguitiesMolecular taxonomy has been instrumental in distinguishing closely related bacterial species initially thought to...

