Related Experiment Video
Updated: May 31, 2026

08:57
Using Phylogenetic Analysis to Investigate Eukaryotic Gene Origin
Published on: August 14, 2018
Molecular phylogeny and evolution of Monilinia (Sclerotiniaceae) based on coding and noncoding rDNA sequences
American Journal of Botany
|June 29, 2011
Summary
Phylogenetic analysis reveals Monilinia fungi are not monophyletic, with distinct lineages identified. Cospeciation with hosts occurred, but host jumps also shaped Monilinia evolution.
Area of Science:
- Mycology
- Evolutionary Biology
- Molecular Systematics
Background:
- The fungal genus Monilinia comprises economically important plant pathogens.
- Understanding the evolutionary relationships within Monilinia is crucial for disease management and taxonomy.
Purpose of the Study:
- To investigate the phylogenetic relationships of Monilinia species and closely related genera.
- To test the monophyly of the genus Monilinia.
- To elucidate the evolutionary history and host associations of Monilinia.
Main Methods:
- Sequencing of nuclear ribosomal DNA (nrDNA) regions, including internal transcribed spacers (ITS), 5.8S, small subunit (SSU), and large subunit (LSU) genes.
- Phylogenetic analyses using maximum parsimony.
Main Results:
- The genus Monilinia was found to be non-monophyletic.
- A clear distinction was observed between the sections Junctoriae and Disjunctoriae.
- Four distinct evolutionary lineages were identified within the Disjunctoriae, associated with different host types (Crataegus, rosaceous stone fruits, ericaceous capsular fruits, ericaceous berries).
- Evidence suggests a combination of cospeciation and host jumps in the evolution of Monilinia-host interactions.
- Sclerotinia pirolae was confirmed as a member of the Disjunctoriae.
- Botrytis and Sclerotinia are the closest relatives to Junctoriae, while Ciborinia is closest to Disjunctoriae.
- Accelerated rRNA evolution was noted in Monilinia species infecting ericaceous berries.
Conclusions:
- The current classification of Monilinia requires revision due to its non-monophyletic status.
- Host-parasite co-evolutionary patterns, including host jumps, have significantly influenced Monilinia diversification.
- The study provides insights into the evolutionary history and systematic placement of Monilinia and related genera.
Related Concept Videos
Evolutionary Relationships through Genome Comparisons
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
Microbial Phylogeny
Understanding the evolutionary relationships among microorganisms is fundamental to microbial ecology and taxonomy. Phylogenetic trees are essential tools for inferring these relationships, relying primarily on comparative analyses of molecular sequences such as DNA, RNA, or proteins. In microbial studies, these trees typically depict the evolutionary paths of diverse bacterial and archaeal species by mapping genetic differences accumulated over time.Phylogenetic trees are composed of tips,...
Modern Molecular Taxonomy
Advancements in molecular biology have revolutionized the identification and characterization of bacteria, with multiple methods leveraging DNA sequencing for enhanced precision. As sequencing technologies improve and costs decline, these approaches are increasingly used in clinical, environmental, and evolutionary studies.Multilocus Sequence Typing (MLST) examines several housekeeping genes, essential chromosomal genes encoding cellular functions, to distinguish strains. Approximately...
Gene Evolution - Fast or Slow?
The genomes of eukaryotes are punctuated by long stretches of sequence which do not code for proteins or RNAs. Although some of these regions do contain crucial regulatory sequences, the vast majority of this DNA serves no known function. Typically, these regions of the genome are the ones in which the fastest change, in evolutionary terms, is observed, because there is typically little to no selection pressure acting on these regions to preserve their sequences.
In contrast, regions which code...
In contrast, regions which code...
Applications of Molecular Taxonomy
Molecular taxonomy has revolutionized the understanding and classification of bacteria, providing precise insights into their diversity, evolutionary relationships, and ecological roles. By utilizing molecular techniques such as DNA sequencing and fingerprinting, researchers have made significant strides in various fields related to bacterial studies.Resolving Taxonomic AmbiguitiesMolecular taxonomy has been instrumental in distinguishing closely related bacterial species initially thought to...
Phylogeny
Phylogeny is concerned with the evolutionary diversification of organisms or groups of organisms. A group of organisms with a name is called a taxon (singular). Taxa (plural) can span different levels of the evolutionary hierarchy. For instance, the group containing all birds is a taxon (comprising the class Aves), and the group of all species of daisies (the genus Bellis) is a taxon. Phylogenies can likewise include just one genus (i.e., depict species relationships) or span an entire kingdom.

