Related Experiment Video
Updated: May 31, 2026

Spatial Separation of Molecular Conformers and Clusters
Published on: January 9, 2014
Surface-confined conformers and coassembly-induced conformer resolution.
Cui-Zhong Guan1, Ting Chen, Jing-Yi Wu
1Institute of Chemistry, Chinese Academy of Sciences, and Beijing National Laboratory for Molecular Sciences, Beijing 100190, China.
Researchers resolved molecular conformers using surface adsorption. Azobenzene-3,3-dicarboxylic acid (ADA-33) on graphite revealed distinct trans conformer assemblies, paving the way for surface-based molecular discrimination.
Area of Science:
- Chemistry
- Surface Science
- Molecular Assembly
Background:
- Stereoisomerism is crucial in chemistry, biology, and pharmacology.
- Molecules with rotatable bonds exist as multiple interconvertible conformers.
- Controlling and resolving conformers is essential for molecular applications.
Purpose of the Study:
- To investigate surface-adsorption-induced conformer resolution.
- To utilize azobenzene-3,3-dicarboxylic acid (ADA-33) as a model compound for studying conformer behavior on surfaces.
- To understand the molecular mechanisms of coadsorption assembly.
Main Methods:
- Employing scanning tunneling microscopy (STM) to observe molecular assemblies.
- Utilizing highly oriented pyrolytic graphite (HOPG) as a substrate.
- Codepositing azobenzene-3,3-dicarboxylic acid (ADA-33) with 1-octanoic acid (OA).
Main Results:
- Two distinct linear assembly phases of trans conformers of ADA-33 were observed on HOPG.
- Codeposition with OA resulted in a single trans conformer of ADA-33 forming a two-component assembly.
- The selective recognition and assembly were attributed to epitaxial growth and weak hydrogen bonding between ADA-33 conformer I and OA.
Conclusions:
- Surface adsorption can effectively resolve and discriminate between molecular conformers.
- The study provides molecular insights into coadsorption phenomena on solid surfaces.
- This work has implications for controlling molecular arrangements and properties at interfaces.
Related Concept Videos
Conformations of Cyclohexane
The chair form is the most stable and derives its name from its resemblance to the “easy chair.” In the chair conformation, two carbon atoms are arranged out-of-plane — one above and one below, minimizing the torsional strain. In the chair form, the bond angle is very close to the ideal tetrahedral value,...
Chair Conformation of Cyclohexane
The hydrogen atoms linked to carbons are arranged in two different axial and equatorial orientations to achieve this staggered...
¹H NMR of Conformationally Flexible Molecules: Temporal Resolution
Conformations of Cycloalkanes
Assembly of Cytoskeletal Filaments
Protein Complexes with Interchangeable Parts
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order to...

