Related Experiment Video
Updated: May 31, 2026

Biosensor for Detection of Antibiotic Resistant Staphylococcus Bacteria
Published on: May 8, 2013
Identification of the third type of PVL phage in ST59 methicillin-resistant Staphylococcus aureus (MRSA) strains
Meng Zhang1, Teruyo Ito, Shanshuang Li
1Department of Infection Control Science, Graduate School of Medicine, Juntendo University, Tokyo, Japan.
Abstract:
The genes lukS-PV and lukF-PV for Panton-Valentine leukocidin (PVL) that confers high virulence to Staphylococcus aureus are located on the prophages (PVL phages) which have been classified into group 1 and 2 sfi21-like Siphoviridae. We report novel PVL phages lysogenized in ST59 methicillin-resistant Staphylococcus aureus (MRSA) strains isolated in Japan (JCSC7247) and Taiwan (JCSC5967). The genomes of φ7247PVL and φ5967PVL showed more than 99% identity, and the regions containing the five genes located at both ends of the prophages, int (integrase), hol (holin), ami (amidase), lukS-PV, and lukF-PV, are highly homologous to extant PVL phages. The genes for the structural module are less homologous to these phages, but are highly homologous to non-PVL phages belonging to group 3 Sfi21-like Siphoviridae, for example φN315. Subsequent PCR identification and nucleotide sequencing of an additional 11 Taiwanese ST59 MRSA isolates suggested they all carry the same phage as φ5967PVL, which differed from φ7247PVL by a single base. This study adds evidence to the notion that novel PVL phages would be generated through illegitimate recombination events by acquiring the region at which hol, ami, luk, and int genes would line up upon lytic growth, and suggests that the PVL-positive MRSA clones that have emerged worldwide may carry distinct phages.
Insights
Novel Panton-Valentine leukocidin (PVL) phages were identified in Staphylococcus aureus strains. These phages, carrying virulence genes, show high similarity to known PVL phages and may arise from recombination events.
Area of Science:
- Microbiology
- Genetics
- Virology
Background:
- Panton-Valentine leukocidin (PVL) genes (lukS-PV and lukF-PV) confer high virulence to Staphylococcus aureus.
- These genes are located on prophages (PVL phages) classified within group 1 and 2 Sfi21-like Siphoviridae.
Purpose of the Study:
- To report novel PVL phages found in ST59 methicillin-resistant Staphylococcus aureus (MRSA) strains from Japan and Taiwan.
- To characterize the genomic features and evolutionary origins of these novel PVL phages.
Main Methods:
- Whole-genome sequencing of novel PVL phages (φ7247PVL and φ5967PVL).
- Comparative genomic analysis with known PVL and non-PVL phages.
- PCR identification and nucleotide sequencing of additional MRSA isolates.
Main Results:
- Two novel PVL phages, φ7247PVL and φ5967PVL, were identified in Japanese and Taiwanese ST59 MRSA strains, respectively.
- The genomes of φ7247PVL and φ5967PVL showed >99% identity, with highly homologous regions for integrase, holin, amidase, and PVL genes compared to extant PVL phages.
- Structural module genes were homologous to non-PVL group 3 Sfi21-like Siphoviridae, suggesting recombination events.
Conclusions:
- Novel PVL phages are generated through illegitimate recombination, acquiring specific gene regions during lytic growth.
- PVL-positive MRSA clones globally may harbor distinct PVL phages, highlighting ongoing phage evolution and diversity.
Related Concept Videos
Clinical Significance of Antibiotic Resistance
Mechanism of Antibiotic Resistance in MRSA
Staphylococcal Skin Infections
DNA Bacteriophages

