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Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
NOD2 gene variants are a risk factor for culture-positive spontaneous bacterial peritonitis and monomicrobial
Tony Bruns1, Jack Peter, Philipp A Reuken
1Department of Internal Medicine II, Division of Gastroenterology, Hepatology, and Infectious Diseases, Jena University Hospital, Jena, Germany. t.bruns@bham.ac.uk
Background:
Spontaneous bacterial peritonitis (SBP) is considered as result of bacterial translocation from the gastrointestinal lumen to the mesenteric lymph nodes and subsequent circulation. Variants of the NOD2 gene contribute to bacterial translocation and were associated with SBP in a recent study.
Methods:
We determined common NOD2 variants by TaqMan polymerase chain reaction and analysed the ascitic fluid neutrophil count and bacterial culture results in 175 prospectively characterized hospitalized patients with decompensated cirrhosis who underwent diagnostic paracentesis in two German centres.
Results:
Ten patients presented with culture-positive SBP, 19 with culture-negative SBP and six had bacterascites. Minor allele frequencies for R702W, G908R and 1007fs in subjects with sterile non-neutrocytic ascites were 3.2, 2.5 and 2.5% respectively. Patients with SBP [odds ratio (OR) 2.7; P=0.036], culture-positive SBP (OR 6.0; P=0.012) and bacterascites (OR 6.0; P=0.050) were more often carriers of NOD2 variants than patients with sterile non-neutrocytic ascites. The mutations 1007fs and G908R were associated with culture-positive SBP (P ≤ 0.005) and R702W with bacterascites (P=0.014). There was no significant association of NOD2 variants with culture-negative SBP (OR 1.6; P=0.493). In logistic regression, previous SBP, a higher model for end-stage liver disease (MELD) score and the presence of a NOD2 variant were independent predictors of ascitic fluid infection. The median survival was insignificantly shorter in patients with NOD2 variants (268 vs. 339 days; P=0.386). In patients without hepatocellular carcinoma at study entry (N=148), NOD2 was a predictor of survival after adjustment for the MELD score and age (hazard ratio 1.89; P=0.045).
Conclusion:
NOD2 variants increase the risk for culture-positive SBP and bacterascites in cirrhosis and may affect survival.
Insights
Genetic variants in the NOD2 gene increase the risk of developing spontaneous bacterial peritonitis (SBP) and bacterascites in patients with cirrhosis. These NOD2 variants may also impact patient survival.
Area of Science:
- Gastroenterology
- Genetics
- Infectious Diseases
Background:
- Spontaneous bacterial peritonitis (SBP) is a serious complication in patients with decompensated cirrhosis.
- Bacterial translocation from the gut is a key mechanism in SBP development.
- NOD2 gene variants have been implicated in bacterial translocation and SBP risk.
Purpose of the Study:
- To investigate the association between common NOD2 variants and the risk of SBP in patients with decompensated cirrhosis.
- To determine if NOD2 variants are independent predictors of ascitic fluid infection and survival.
Main Methods:
- Genotyping of common NOD2 variants (R702W, G908R, 1007fs) using TaqMan polymerase chain reaction.
- Analysis of ascitic fluid neutrophil count and bacterial culture results in 175 patients with decompensated cirrhosis.
- Logistic regression analysis to identify predictors of infection and survival.
Main Results:
- Patients with SBP, culture-positive SBP, and bacterascites were more likely to carry NOD2 variants.
- Specific NOD2 mutations (1007fs, G908R) were associated with culture-positive SBP, and R702W with bacterascites.
- NOD2 variants, higher MELD score, and prior SBP were independent predictors of ascitic fluid infection.
- NOD2 variants were associated with survival in patients without hepatocellular carcinoma.
Conclusions:
- NOD2 variants are associated with an increased risk of culture-positive SBP and bacterascites in cirrhosis patients.
- NOD2 variants may serve as independent predictors for ascitic fluid infection and influence patient survival.
- Further research into NOD2's role in SBP pathogenesis and management is warranted.
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