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Genetic variants in the folate pathway and risk of childhood acute lymphoblastic leukemia
Catherine Metayer1, Ghislaine Scélo, Anand P Chokkalingam
1School of Public Health, University of California, Berkeley, 1995 University Avenue, Suite 460, Berkeley, CA 94704-7392, USA. cmetayer@berkeley.edu
Insights
Genetic variations in the folate pathway are linked to childhood acute lymphoblastic leukemia (ALL) risk. Maternal folate intake can modify this association, highlighting the importance of genetic factors in ALL.
Area of Science:
- Genetics
- Nutritional Epidemiology
- Oncology
Background:
- Folate is crucial for DNA synthesis, repair, and methylation through one-carbon metabolism.
- Childhood acute lymphoblastic leukemia (ALL) is a significant health concern, and its etiology is multifactorial.
Purpose of the Study:
- To investigate the association between child's germline genetic variations in the folate pathway and the risk of childhood ALL.
- To determine if maternal periconception folate and alcohol intake modify this risk.
Main Methods:
- Genotyping of 76 single nucleotide polymorphisms (SNPs) across 10 folate pathway genes in 377 ALL cases and 448 controls.
- Analysis of log-additive associations between genotypes and ALL risk, adjusted for demographic factors.
- Examination of gene-environment interactions with maternal folate and alcohol intake.
Main Results:
- Significant associations were found between SNPs in CBS, MTRR, and TYMS/ENOFS genes and childhood ALL risk.
- Specific regions of the CBS gene showed associations with ALL risk in both Hispanic and non-Hispanic populations.
- Maternal folate intake levels modified the risk associations for SNPs in CBS, MTRR, and TYMS.
Conclusions:
- Genetic variability within the folate pathway plays a role in childhood ALL susceptibility.
- The findings underscore the interplay between genetic predisposition and environmental factors, such as maternal nutrition, in childhood leukemia.
Objective:
Folate is involved in the one-carbon metabolism that plays an essential role in the synthesis, repair, and methylation of DNA. We examined whether child's germline genetic variation in the folate pathway is associated with childhood acute lymphoblastic leukemia (ALL), and whether periconception maternal folate and alcohol intake modify the risk.
Methods:
Seventy-six single nucleotide polymorphisms (SNPs), including 66 haplotype-tagging SNPs in 10 genes (CBS, DHFR, FOLH1, MTHFD1, MTHFR, MTR, MTRR, SHMT1, SLC19A1, and TYMS), were genotyped in 377 ALL cases and 448 controls. Log-additive associations between genotypes and ALL risk were adjusted for age, sex, Hispanic ethnicity (when appropriate), and maternal race.
Results:
Single and haplotype SNPs analyses showed statistically significant associations between SNPs located in (or adjacent to) CBS, MTRR, TYMS/ENOFS, and childhood ALL. Many regions of CBS were associated with childhood ALL in Hispanics and non-Hispanics (p < 0.01). Levels of maternal folate intake modified associations with SNPs in CBS, MTRR, and TYMS.
Conclusion:
Our data suggest the importance of genetic variability in the folate pathway and childhood ALL risk.
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