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Updated: May 31, 2026

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A Direct, Early Stage Guanidinylation Protocol for the Synthesis of Complex Aminoguanidine-containing Natural Products
Published on: September 9, 2016
2-(1,3-Benzothia-zol-2-yl)guanidine
Summary
This study analyzes the crystal structure of a compound C(8)H(8)N(4)S, revealing molecular planarity variations and hydrogen bonding. These interactions form dimers and chains, influencing the compound's solid-state structure.
Area of Science:
- Crystallography
- Chemical Physics
- Materials Science
Background:
- Understanding molecular structure and intermolecular interactions is crucial for predicting material properties.
- The compound C(8)H(8)N(4)S presents an interesting case due to potential variations in molecular geometry.
Purpose of the Study:
- To elucidate the crystal structure of C(8)H(8)N(4)S.
- To investigate the nature and extent of hydrogen bonding within the crystal lattice.
- To characterize the planarity and conformational flexibility of the independent molecules.
Main Methods:
- Single-crystal X-ray diffraction was employed to determine the three-dimensional structure.
- Analysis of bond lengths, bond angles, and intermolecular distances.
- Identification and analysis of hydrogen bonding networks (N-H⋯N).
Main Results:
- Two independent molecules were identified in the crystal, one nearly planar and the other slightly buckled.
- The guanidine unit showed a deviation from the fused-ring system plane in the buckled molecule.
- Intermolecular N-H⋯N hydrogen bonds formed dimers, which were further linked into chains along the [010] direction.
- Intramolecular N-H⋯N hydrogen bonds were observed within each independent molecule.
Conclusions:
- The crystal structure of C(8)H(8)N(4)S is characterized by distinct molecular conformations and extensive hydrogen bonding.
- Intermolecular interactions dictate the formation of dimers and extended chains, influencing the overall crystal packing.
- The presence of both intra- and intermolecular hydrogen bonds highlights the compound's capacity for complex self-assembly.
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