Related Experiment Video
Updated: Jan 26, 2026

12:27
A Pipeline to Investigate the Structures and Signaling Pathways of Sphingosine 1-Phosphate Receptors
Published on: June 8, 2022
3.9K
2-Amino-3-carb-oxy-pyrazin-1-ium dihydrogen phosphate
Summary
This study reveals the crystal structure of a compound featuring hydrogen bonds. These bonds form intricate double chains and a 3D network, highlighting molecular interactions.
Area of Science:
- Crystal engineering
- Supramolecular chemistry
- Hydrogen bonding
Background:
- Understanding the self-assembly of organic cations and inorganic anions is crucial in crystal engineering.
- Hydrogen bonds play a pivotal role in directing the formation of extended crystalline networks.
- The specific interactions within the title compound, C(5)H(6)N(3)O(2) (+)·H(2)PO(4) (-), were investigated.
Purpose of the Study:
- To elucidate the crystal structure of the title compound.
- To analyze the hydrogen bonding patterns and their role in network formation.
- To characterize the resulting supramolecular architecture.
Main Methods:
- Single-crystal X-ray diffraction was employed to determine the three-dimensional crystal structure.
- Analysis of hydrogen bond distances and angles was performed.
- Graph-set theory was utilized to describe the hydrogen bonding motifs.
Main Results:
- The crystal structure reveals dihydrogen phosphate anions linked by O-H⋯O hydrogen bonds into infinite double chains along the b axis.
- Cationic dimers, formed by N-H⋯O hydrogen bonds, bridge these chains, creating a 2D network parallel to the (100) plane.
- Various graph-set motifs (R(3)(3)(12), R(4)(3)(10), R(2)(2)(8), C(4)) were identified within the network.
- Weak C-H⋯O hydrogen bonds further connect these layers, resulting in a 3D supramolecular network.
Conclusions:
- The study successfully characterized the crystal structure and detailed the hydrogen bonding network.
- The formation of a complex 3D network is driven by a combination of O-H⋯O, N-H⋯O, and C-H⋯O hydrogen bonds.
- This work provides insights into the rational design of crystalline materials based on specific intermolecular interactions.
Related Concept Videos
Loss of Carboxy Group as CO2: Decarboxylation of β-Ketoacids
3.9K
Carboxylic acids, upon heating, undergo a decarboxylation reaction by releasing carbon dioxide gas. Monocarboxylic acids do not undergo decarboxylation easily. However, a silver salt of carboxylic acid reacts with bromine or iodine under high temperature to release carbon dioxide gas and forms halide with one less carbon. This reaction is called the Hunsdiecker reaction.
3.9K
Loss of Carboxy Group as CO2: Decarboxylation of Malonic Acid Derivatives
2.6K
Just like β-keto acids—which upon thermal decarboxylation form ketones—β-dicarboxylic acids undergo decarboxylation to generate monocarboxylic acids with the liberation of carbon dioxide.
2.6K
Amino acids
104.9K
Amino acids are the monomers that comprise proteins. Each amino acid has the same fundamental structure, which consists of a central carbon atom, or the alpha (α) carbon, bonded to an amino group (NH2), a carboxyl group (COOH), and to a hydrogen atom. Every amino acid also has another atom or group of atoms bonded to the central atom known as the R group. There are 20 common amino acids present in proteins, each with a different R group. Variation in the amino acid sequence is responsible for...
104.9K
Predicting Products: SN1 vs. SN2
16.0K
Nucleophilic substitution reactions of alkyl halides can proceed via an SN1 or an SN2 mechanism. While in SN2 reactions, the nucleophile attacks the substrate simultaneously as the leaving group departs, in SN1 reactions, the substrate first dissociates to give the carbocation intermediate. Various factors such as the structure of the substrate, the strength of the nucleophile, and the nature of the solvent promote one mechanism over the other.
With increased substitution on the alkyl halide,...
With increased substitution on the alkyl halide,...
16.0K
ortho–para-Directing Activators: –CH3, –OH, –⁠NH2, –OCH3
7.3K
All ortho–para directors, excluding halogens, are activating groups. These groups donate electrons to the ring, making the ring carbons electron-rich. Consequently, the reactivity of the aromatic ring towards electrophilic substitution increases. For instance, the nitration of anisole is about 10,000 times faster than the nitration of benzene. The electron-donating effect of the methoxy group in anisole activates the ortho and para positions on the ring and stabilizes the corresponding...
7.3K
Phosphate Buffer
5.0K
The phosphate buffer system is a critical biological mechanism for maintaining pH stability in the body. This system operates primarily through two components: sodium dihydrogen phosphate (NaH2PO4), which acts as a weak acid, and sodium hydrogen phosphate (Na2HPO4), which serves as a weak base.
Sodium dihydrogen phosphate does not fully dissociate in neutral or acidic solutions. When a strong base, such as sodium hydroxide (NaOH), is introduced into the solution, sodium dihydrogen phosphate...
Sodium dihydrogen phosphate does not fully dissociate in neutral or acidic solutions. When a strong base, such as sodium hydroxide (NaOH), is introduced into the solution, sodium dihydrogen phosphate...
5.0K

