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Updated: May 30, 2026

Assays for the Degradation of Misfolded Proteins in Cells
Published on: August 28, 2016
Hdm2- and proteasome-dependent turnover limits p21 accumulation during S phase
Daniel Ciznadija1, Xin-Hua Zhu, Andrew Koff
1Program in Molecular Biology, Sloan-Kettering Institute, Memorial Sloan-Kettering Cancer Center, New York, NY, USA.
Abstract:
Double-strand DNA breaks detected in different phases of the cell cycle induce molecularly distinct checkpoints downstream of the ATM kinase. p53 is known to induce arrest of cells in G 1 and occasionally G 2 phase but not S phase following ionizing radiation, a time at which the MRN complex and cdc25-dependent mechanisms induce arrest. Our understanding of how cell cycle phase modulates pathway choice and the reasons certain pathways might be favored at different times is limited. In this report, we examined how cell cycle phase affects the activation of the p53 checkpoint and its ability to induce accumulation of the cdk2 inhibitor p21. Using flow cytometric tools and centrifugal elutriation, we found that the p53 response to ionizing radiation is largely intact in all phases of the cell cycle; however, the accumulation of p21 protein is limited to the G 1 and G 2 phase of the cell cycle because of the activity of a proteasome-dependent p21 turnover pathway in S-phase cells. We found that the turnover of p21 was independent of the SCF (skp2) E3 ligase but could be inhibited, at least in part, by reducing hdm2, although this depended on the cell type studied. Our results suggest that there are several redundant pathways active in S-phase cells that can prevent the accumulation of p21.
Insights
Cell cycle phase impacts DNA damage response. While p53 activation is consistent, p21 protein accumulation is blocked in S-phase due to proteasome-dependent turnover, revealing redundant S-phase pathways.
Area of Science:
- Molecular Biology
- Cell Biology
- Genetics
Background:
- Double-strand DNA breaks trigger distinct cell cycle checkpoints.
- The p53 pathway is known to induce G1/G2 arrest but not S-phase arrest after ionizing radiation.
Purpose of the Study:
- To investigate how cell cycle phase influences p53 checkpoint activation.
- To determine the mechanisms controlling p21 accumulation in response to DNA damage across cell cycle phases.
Main Methods:
- Flow cytometry and centrifugal elutriation were used to synchronize cells.
- Analysis of p53 activation and p21 protein levels in response to ionizing radiation.
Main Results:
- The p53 response to ionizing radiation is intact across all cell cycle phases.
- p21 protein accumulation is restricted to G1 and G2 phases due to proteasome-dependent degradation in S-phase.
- p21 turnover in S-phase is independent of SCF (skp2) but can be partially inhibited by reducing hdm2.
Conclusions:
- Cell cycle phase differentially regulates p21 protein accumulation, not p53 activation, following DNA damage.
- Redundant pathways in S-phase cells prevent p21 accumulation, contributing to the lack of S-phase arrest.
- Understanding these phase-specific mechanisms is crucial for comprehending DNA damage response pathways.
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