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Sedimentation Equilibrium of a Small Oligomer-forming Membrane Protein: Effect of Histidine Protonation on Pentameric Stability
Published on: April 2, 2015
Hydrogen-bond energetics drive helix formation in membrane interfaces
Paulo F Almeida1, Alexey S Ladokhin, Stephen H White
1Department of Chemistry and Biochemistry, University of North Carolina Wilmington, Wilmington, NC 28403, USA.
Partitioning unfolded peptides into membranes is costly, but hydrogen bonds reduce this cost, enabling secondary structure formation. The free energy reduction per residue (∆G(res)) for this process is independent of peptide hydrophobic moment.
Area of Science:
- Biochemistry
- Biophysics
- Membrane Biology
Background:
- Unfolded peptides partitioning into membrane interfaces incur a free energy cost (ΔG) due to backbone peptide bonds.
- This partitioning cost is significantly reduced when peptide bonds form hydrogen bonds.
- This reduction facilitates secondary structure formation via partitioning-folding coupling in amphiphilic peptides.
Purpose of the Study:
- To accurately compute the free energy reduction per residue (∆G(res)) driving peptide folding.
- To resolve the debate regarding the dependence of ∆G(res) on the hydrophobic moment (µH) of amphiphilic α-helical peptides.
Main Methods:
- Analysis of published data for two peptide families with varying hydrophobic moments and charges.
- Development of a correct computational method for ∆G(res).
Main Results:
- The free energy reduction per residue (∆G(res)) does not depend on the hydrophobic moment (µH).
- The best estimate for ∆G(res) is -0.37 ± 0.02 kcal mol⁻¹.
- Established a reliable method for calculating ∆G(res) in membrane-associated peptide folding.
Conclusions:
- Partitioning-folding coupling is a key mechanism for secondary structure formation at membrane interfaces.
- The free energy contribution per residue to folding is constant and not influenced by peptide amphipathicity.
- Provides a precise value for ∆G(res), crucial for understanding peptide-membrane interactions and protein folding dynamics.
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