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In Vitro Selection of Engineered Transcriptional Repressors for Targeted Epigenetic Silencing
Published on: May 5, 2023
The proto-oncoprotein KR-POK represses transcriptional activation of CDKN1A by MIZ-1 through competitive binding
1Department of Biochemistry and Molecular Biology, Yonsei University School of Medicine, Seoul, Korea.
Abstract:
The BTB/POZ family of proteins has been implicated in multiple biological processes, including tumourigenesis, DNA damage responses and cell cycle progression and development. MIZ-1 (Myc-interacting zinc-finger protein 1) is known to activate transcription of CDKN1A. We recently found that a kidney cancer-related POK transcription factor, KR-POK, is highly expressed in kidney, brain and bone marrow cancer tissues and is a potential proto-oncoprotein. Mouse Kr-pok represses transcription of the CDKN1A by acting on the proximal promoter. The BiFC/FRET assay, co-immunoprecipitation and glutathione S-transferase-fusion protein pull-down assay indicate that MIZ-1 and Kr-pok interact via their POZ domains. Oligoucleotide pull-down assays and chromatin immunoprecipitation assays revealed that MIZ-1 binds to the proximal GC-box#3 (bp, -55 to -63) and the MIZ-1-binding elements, MRE-A (bp, -90 to -64) and MRE-B (bp, -27 to -17). Interestingly, MIZ-1 also binds to the distal p53-binding elements. Kr-pok binds to the proximal GC-box#1 (bp, -95 to -100) and #3 (bp, -55 to -63) relatively strongly. It also shows weak binding to the MREs and the distal p53-binding elements. Kr-pok competes with MIZ-1 in binding to these elements and represses transcription by inhibiting MIZ-1/p300 recruitment, which decreases the acetylation of histones H3 and H4. Our data indicate that Kr-pok stimulates cell proliferation by interfering with the function of MIZ-1 in CDKN1A gene transcription using a mechanism that is radically different from other MIZ-1-interacting proteins, such as B-cell lymphoma 6, c-Myc and Gfi-1.
Insights
Kidney cancer-associated KR-POK protein represses CDKN1A gene transcription by inhibiting MIZ-1, promoting cell proliferation. This mechanism differs from other MIZ-1 interactions.
Area of Science:
- Molecular Biology
- Cancer Research
- Epigenetics
Background:
- The BTB/POZ protein family plays roles in tumorigenesis and cell cycle.
- Myc-interacting zinc-finger protein 1 (MIZ-1) activates CDKN1A transcription.
- Kidney cancer-associated KR-POK is a potential proto-oncoprotein overexpressed in cancers.
Purpose of the Study:
- To investigate the role of KR-POK in kidney cancer.
- To elucidate the mechanism by which KR-POK affects CDKN1A gene transcription.
- To understand the interaction between KR-POK and MIZ-1.
Main Methods:
- BiFC/FRET assay, co-immunoprecipitation, and GST pull-down assays to study protein interactions.
- Oligonucleotide pull-down and chromatin immunoprecipitation assays to determine DNA binding.
- Analysis of histone acetylation levels.
Main Results:
- KR-POK interacts with MIZ-1 via their POZ domains.
- KR-POK represses CDKN1A transcription by binding to promoter elements and competing with MIZ-1.
- KR-POK inhibits MIZ-1/p300 recruitment, reducing histone acetylation and promoting cell proliferation.
Conclusions:
- KR-POK acts as a proto-oncoprotein by interfering with MIZ-1's function in CDKN1A transcription.
- This mechanism of cell proliferation stimulation is distinct from other MIZ-1-interacting proteins.
- KR-POK represents a novel therapeutic target in kidney cancer.
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