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Updated: May 30, 2026

Identification of Alternative Splicing and Polyadenylation in RNA-seq Data
Published on: June 24, 2021
Identification and characterization of alternative splice variants of the mouse Trek2/Kcnk10 gene
1Department of Pharmacology, University of Minnesota, 321 Church Street SE, Minneapolis, MN 55455, USA.
Abstract:
Two-pore domain K(+) (K(2P)) channels underlie leak or background potassium conductances in many cells. The Trek subfamily of K(2P) channels, which includes Trek1/Kcnk2 and Trek2/Kcnk10 and has been implicated in depression, nociception, and cognition, exhibits complex regulation and can modulate cell excitability in response to a wide array of stimuli. While alternative translation initiation and alternative splicing contribute to the structural and functional diversity of Trek1, the impact of post-transcriptional modifications on the expression and function of Trek2 is unclear. Here, we characterized two novel splice isoforms of the mouse Trek2 gene. One variant is a truncated form of Trek2 that possesses two transmembrane segments and one pore domain (Trek2-1p), while the other (Trek2b) differs from two known mouse Trek2 isoforms (Trek2a and Trek2c) at the extreme amino terminus. Both Trek2-1p and Trek2b, and Trek2a and Trek2c, showed prominent expression in the mouse CNS. Expression patterns of the Trek2 variants within the CNS were largely overlapping, though some isoform-specific differences were noted. Heterologous expression of Trek2-1p yielded no novel whole-cell currents in transfected human embryonic kidney (HEK) 293 cells. In contrast, expression of Trek2b correlated with robust K(+) currents that were ~fivefold larger than currents measured in cells expressing Trek2a or Trek2c, a difference mirrored by significantly higher levels of Trek2b found at the plasma membrane. This study provides new insights into the molecular diversity of Trek channels and suggests a potential role for the Trek2 amino terminus in channel trafficking and/or stability.
Insights
Researchers identified new Trek2 channel variants, with Trek2b significantly increasing potassium currents and plasma membrane levels, suggesting a role in channel trafficking and stability.
Area of Science:
- Neuroscience
- Molecular Biology
- Ion Channel Research
Background:
- Two-pore domain potassium (K(2P)) channels, specifically the Trek subfamily (Trek1/Kcnk2, Trek2/Kcnk10), are crucial for background potassium conductances and are implicated in neurological functions.
- While Trek1's diversity arises from alternative translation and splicing, Trek2's post-transcriptional regulation remains largely uncharacterized.
Purpose of the Study:
- To investigate the impact of post-transcriptional modifications on the expression and function of the Trek2 channel.
- To characterize novel splice isoforms of the mouse Trek2 gene and their functional consequences.
Main Methods:
- Identification and characterization of novel mouse Trek2 splice isoforms (Trek2-1p and Trek2b).
- Analysis of Trek2 variant expression patterns in the mouse central nervous system (CNS).
- Heterologous expression of Trek2 isoforms in HEK 293 cells to assess functional currents and plasma membrane localization.
Main Results:
- Two novel Trek2 splice variants, a truncated Trek2-1p and an amino-terminally altered Trek2b, were identified with prominent CNS expression.
- Trek2-1p expression did not yield novel whole-cell currents.
- Trek2b expression resulted in significantly larger K(+) currents (~fivefold) compared to Trek2a and Trek2c, correlating with increased plasma membrane levels.
Conclusions:
- The study reveals molecular diversity within the Trek2 channel subfamily through novel splice isoforms.
- The amino terminus of Trek2b plays a critical role in enhancing channel trafficking and/or stability, leading to increased K(+) currents.
- These findings provide new insights into the regulation of K(2P) channel function and neuronal excitability.
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