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Updated: May 30, 2026

Yeast As a Chassis for Developing Functional Assays to Study Human P53
Published on: August 4, 2019
p53 Interacts with RNA polymerase II through its core domain and impairs Pol II processivity in vivo
Sunyoung Kim1, Sri Kripa Balakrishnan, David S Gross
1Department of Biochemistry and Molecular Biology, Louisiana State University Health Sciences Center, Shreveport, Louisiana, United States of America.
Abstract:
The tumor suppressor p53 principally functions as a gene-specific transcription factor. p53 triggers a variety of anti-proliferative programs by activating or repressing the transcription of effector genes in response to genotoxic stress. To date, much effort has been placed on understanding p53's ability to affect transcription in the context of its DNA-binding activity. How p53 regulates transcriptional output independent of DNA binding is less well understood. Here we provide evidence that human p53 can physically interact with the large subunit of RNA polymerase II (Pol II) both in in vitro interaction assays and in whole cell extracts, and that this interaction is mediated (at least in part) through p53's core DNA-binding domain and the Ser5-phosphorylated CTD of Pol II. Ectopic expression of p53, combined with mutations in transcription elongation factors or exposure to drugs that inhibit Pol II elongation, elicit sickness or lethality in yeast cells. These phenotypes are suppressed by oncogenic point mutations within p53's core domain. The growth phenotypes raise the possibility that p53 impairs Pol II elongation. Consistent with this, a p53-dependent increase in Pol II density is seen at constitutively expressed genes without a concomitant increase in transcript accumulation. Additionally, p53-expressing yeast strains exhibit reduced transcriptional processivity at an episomal reporter gene; this inhibitory activity is abolished by a core domain point mutation. Our results suggest a novel mechanism by which p53 can regulate gene transcription, and a new biological function for its core domain that is susceptible to inactivation by oncogenic point mutations.
Insights
The tumor suppressor p53 interacts with RNA polymerase II (Pol II) to regulate gene transcription independently of DNA binding. This interaction can impair Pol II elongation, a function disrupted by cancer-associated mutations in p53.
Area of Science:
- Molecular Biology
- Cancer Biology
- Gene Regulation
Background:
- The tumor suppressor p53 is a transcription factor crucial for anti-proliferative responses to genotoxic stress.
- p53's role in regulating gene transcription, particularly its DNA-binding-independent functions, remains less understood.
Purpose of the Study:
- To investigate the mechanism by which p53 regulates gene transcription independent of its DNA-binding activity.
- To explore the interaction between p53 and RNA polymerase II (Pol II).
Main Methods:
- In vitro interaction assays and whole cell extracts to study p53-Pol II binding.
- Yeast cell models with ectopic p53 expression, mutations in elongation factors, or Pol II inhibitors.
- Analysis of Pol II density and transcriptional processivity at specific genes and reporter constructs.
Main Results:
- Human p53 directly interacts with the large subunit of Pol II, mediated by p53's core domain and the Ser5-phosphorylated CTD of Pol II.
- Ectopic p53 expression in yeast, under conditions impairing transcription elongation, causes sickness or lethality, which is suppressed by oncogenic p53 mutations.
- p53 expression leads to increased Pol II density without increased transcript levels and reduces transcriptional processivity, indicating impaired elongation.
Conclusions:
- p53 can regulate gene transcription through a novel mechanism involving direct interaction with Pol II, independent of DNA binding.
- This DNA-binding-independent function of p53's core domain appears to inhibit Pol II elongation.
- Oncogenic mutations in p53's core domain can inactivate this regulatory function, suggesting a new role in cancer development.
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