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Detection of Horizontal Gene Transfer Mediated by Natural Conjugative Plasmids in E. coli
Published on: March 24, 2023
Fecal colonization of Enterobacteriaceae carrying plasmid-mediated quinolone resistance determinants in Korea
Haeng Soon Jeong1, Il Kwon Bae, Jeong Hwan Shin
1Department of Laboratory Medicine, Inje University College of Medicine, 633-165 Gaegeum-dong Busanjin-gu, Busan, Korea.
Abstract:
The aims of the current study were to investigate the prevalence and molecular characteristics of plasmid-mediated quinolone resistance (PMQR) genes from colonizing fecal organisms and to compare the incidence and subtype of these genes according to bacterial species and hospital at five tertiary-care hospitals in Korea. A total of 500 nonduplicated clinical isolates of Enterobacteriaceae were obtained from fecal specimens at five tertiary-care hospitals between March and May 2008. The PMQR genes (qnrA, qnrB, qnrS, aac(6')-Ib-cr, and qepA) were amplified by PCR and confirmed by direct sequencing of the PCR products. A total of 83 (16.6%) qnr-positive isolates were detected. The prevalence rates of qnrA, qnrB, and qnrS were 1.4%, 13.6%, and 1.6%, respectively. The species distributions of qnrB-positive isolates were Klebsiella pneumoniae (37/109; 33.9%), Citrobacter freundii (10/34; 29.4%), Citrobacter braakii (8/13; 61.5%), and Escherichia coli (8/275; 2.9%). Sixteen subtypes of qnrB were detected, including seven novel variants. The prevalences of aac(6')-Ib-cr and qepA were 15.6% (n=78) and 0.6% (n=3), respectively. The aac(6')-Ib-cr gene was detected in 39 (47.0%) of 83 qnr-positive isolates and 39 (9.4%) of 417 qnr-negative isolates There was one qepA variant containing a novel mutation (Ala231Val). The prevalence of PMQR genes was high in Enterobacteriaceae from stool specimens in Korea, and there was a close relation between qnr and aac(6')-Ib-cr.
Insights
Plasmid-mediated quinolone resistance (PMQR) genes are prevalent in fecal Enterobacteriaceae in Korea. The study found a high incidence of qnrB and aac(6')-Ib-cr genes, with several novel variants identified.
Area of Science:
- Microbiology
- Molecular Biology
- Infectious Diseases
Background:
- Plasmid-mediated quinolone resistance (PMQR) genes contribute to antimicrobial resistance.
- Understanding the prevalence and molecular characteristics of PMQR genes is crucial for public health.
- Enterobacteriaceae are common causes of infections and can harbor resistance genes.
Purpose of the Study:
- To investigate the prevalence and molecular characteristics of PMQR genes in fecal Enterobacteriaceae.
- To compare the incidence and subtypes of PMQR genes across different bacterial species and hospitals.
- To identify novel variants of PMQR genes.
Main Methods:
- Collected 500 nonduplicated Enterobacteriaceae isolates from fecal specimens at five Korean tertiary-care hospitals.
- Utilized Polymerase Chain Reaction (PCR) to amplify and direct sequencing to confirm PMQR genes (qnrA, qnrB, qnrS, aac(6 ext{ extquotesingle}) -Ib-cr, and qepA).
- Analyzed gene prevalence, distribution by species and hospital, and identified gene subtypes and variants.
Main Results:
- 83 (16.6%) of isolates were qnr-positive, with qnrB being the most prevalent (13.6%).
- High prevalence of qnrB was observed in Klebsiella pneumoniae (33.9%) and Citrobacter braakii (61.5%).
- aac(6 ext{ extquotesingle}) -Ib-cr was detected in 15.6% of isolates, often co-occurring with qnr genes. Seven novel qnrB variants and one qepA variant were identified.
Conclusions:
- PMQR genes are highly prevalent in Enterobacteriaceae from stool specimens in Korea.
- A significant association exists between qnr and aac(6 ext{ extquotesingle}) -Ib-cr genes.
- The emergence of novel PMQR gene variants highlights the need for continuous surveillance.
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